Unveiling the Biodiversity of Deep-Sea Nematodes through Metabarcoding: Are We Ready to Bypass the Classical Taxonomy?

Linking operational clustered taxonomic units (OCTUs) from parallel ultra sequencing (PUS) to nematode species

(2015) D. L. Porazinska et al.   ZOOTAXA

Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes

(2014) Vera G. Fonseca et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Challenging the paradigms of deep-sea ecology

(2014) Roberto Danovaro et al.   TRENDS IN ECOLOGY & EVOLUTION

Real world biodiversity–ecosystem functioning: a seafloor perspective

(2014) Paul V.R. Snelgrove et al.   TRENDS IN ECOLOGY & EVOLUTION

Intra-Genomic Variation in the Ribosomal Repeats of Nematodes

(2013) Holly M. Bik et al.   PLoS One

The Magnitude of Global Marine Species Diversity

(2012) Ward Appeltans et al.   CURRENT BIOLOGY

Biodiversity loss and its impact on humanity

(2012) Bradley J. Cardinale et al.   NATURE

Nematode Spatial and Ecological Patterns from Tropical and Temperate Rainforests

(2012) Dorota L. Porazinska et al.   PLoS One

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Low endemism, continued deep-shallow interchanges, and evidence for cosmopolitan distributions in free-living marine nematodes (order Enoplida)

(2011) Holly M Bik et al.   BMC EVOLUTIONARY BIOLOGY

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

(2011) HOLLY M. BIK et al.   MOLECULAR ECOLOGY

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Man and the Last Great Wilderness: Human Impact on the Deep Sea

(2011) Eva Ramirez-Llodra et al.   PLoS One

Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

(2011) Béatrice Lecroq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

Ecometagenetics confirm high tropical rainforest nematode diversity

(2010) DOROTA L. PORAZINSKA et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Exploring the Use of Cytochrome Oxidase c Subunit 1 (COI) for DNA Barcoding of Free-Living Marine Nematodes

(2010) Sofie Derycke et al.   PLoS One

Linking DNA sequences to morphology: cryptic diversity and population genetic structure in the marine nematodeThoracostoma trachygaster(Nematoda, Leptosomatidae)

(2010) Sofie Derycke et al.   ZOOLOGICA SCRIPTA

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity

(2009) DOROTA L. PORAZINSKA et al.   Molecular Ecology Resources

Integrative taxonomy in two free-living nematode species complexes

(2008) GUSTAVO FONSECA et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Exponential Decline of Deep-Sea Ecosystem Functioning Linked to Benthic Biodiversity Loss

(2008) Roberto Danovaro et al.   CURRENT BIOLOGY

It's all relative: ranking the diversity of aquatic bacterial communities

(2008) Allison K. Shaw et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluation of combined morphological and molecular techniques for marine nematode (Terschellingia spp.) identification

(2008) P. Bhadury et al.   MARINE BIOLOGY