Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas

Diversity and spatiotemporal dynamics of bacterial communities: physicochemical and other drivers along an acid mine drainage

(2014) Aurélie Volant et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial metabolism of environmental arsenic—mechanisms and biotechnological applications

(2013) Martin C. Kruger et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Species matter: the role of competition in the assembly of congeneric bacteria

(2013) Alexander F Koeppel et al.   ISME Journal

Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont

(2013) Satoshi Nakagawa et al.   ISME Journal

Archaeal diversity: temporal variation in the arsenic-rich creek sediments of Carnoulès Mine, France

(2012) A. Volant et al.   EXTREMOPHILES

The interconnection between biofilm formation and horizontal gene transfer

(2012) Jonas Stenløkke Madsen et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Characteristics of a phylogenetically ambiguous, arsenic-oxidizing Thiomonas sp., Thiomonas arsenitoxydans strain 3AsT sp. nov

(2011) Djamila Slyemi et al.   ARCHIVES OF MICROBIOLOGY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

(2011) Philippe N Bertin et al.   ISME Journal

Subinhibitory Arsenite Concentrations Lead to Population Dispersal in Thiomonas sp.

(2011) Marie Marchal et al.   PLoS One

Horizontal Gene Exchange in Environmental Microbiota

(2011) Rustam I. Aminov   Frontiers in Microbiology

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature

(2010) Vincent J Denef et al.   ISME Journal

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Structure, Function, and Evolution of the Thiomonas spp. Genome

(2010) Florence Arsène-Ploetze et al.   PLoS Genetics

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes

(2009) Christopher G Bryan et al.   BMC MICROBIOLOGY

Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria

(2009) Kevin Penn et al.   ISME Journal

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geochemical processes controlling fate and transport of arsenic in acid mine drainage (AMD) and natural systems

(2008) Hefa Cheng et al.   JOURNAL OF HAZARDOUS MATERIALS

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

(2008) A. Koeppel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA