Phylogenetic Co-Occurrence of ExoR, ExoS, and ChvI, Components of the RSI Bacterial Invasion Switch, Suggests a Key Adaptive Mechanism Regulating the Transition between Free-Living and Host-Invading Phases in Rhizobiales
出版年份 2015 全文链接
标题
Phylogenetic Co-Occurrence of ExoR, ExoS, and ChvI, Components of the RSI Bacterial Invasion Switch, Suggests a Key Adaptive Mechanism Regulating the Transition between Free-Living and Host-Invading Phases in Rhizobiales
作者
关键词
Phylogenetic analysis, Sequence alignment, Phylogenetics, Plant pathogens, Animal phylogenetics, Protein domains, Plant bacterial pathogens, Multiple alignment calculation
出版物
PLoS One
Volume 10, Issue 8, Pages e0135655
出版商
Public Library of Science (PLoS)
发表日期
2015-08-27
DOI
10.1371/journal.pone.0135655
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Agrobacterium tumefaciens ExoR Controls Acid Response Genes and Impacts Exopolysaccharide Synthesis, Horizontal Gene Transfer, and Virulence Gene Expression
- (2014) B. C. Heckel et al. JOURNAL OF BACTERIOLOGY
- Molecular modeling and computational analyses suggests that theSinorhizobium melilotiperiplasmic regulator protein ExoR adopts a superhelical fold and is controlled by a unique mechanism of proteolysis
- (2014) Eliza M. Wiech et al. PROTEIN SCIENCE
- Members of the Sinorhizobium meliloti ChvI regulon identified by a DNA binding screen
- (2013) Louise Bélanger et al. BMC MICROBIOLOGY
- Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
- (2013) Dongying Wu et al. PLoS One
- Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43T)
- (2013) Anne Fiebig et al. Standards in Genomic Sciences
- Discriminative modelling of context-specific amino acid substitution probabilities
- (2012) Christof Angermüller et al. BIOINFORMATICS
- The inner membrane histidine kinase EnvZ senses osmolality via helix-coil transitions in the cytoplasm
- (2012) Loo Chien Wang et al. EMBO JOURNAL
- Sinorhizobium meliloti ExoR Is the Target of Periplasmic Proteolysis
- (2012) H.-Y. Lu et al. JOURNAL OF BACTERIOLOGY
- CDD: conserved domains and protein three-dimensional structure
- (2012) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Acid-Induced Type VI Secretion System Is Regulated by ExoR-ChvG/ChvI Signaling Cascade in Agrobacterium tumefaciens
- (2012) Chih-Feng Wu et al. PLoS Pathogens
- Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates
- (2011) Y. Yang et al. BIOINFORMATICS
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- SMART 7: recent updates to the protein domain annotation resource
- (2011) I. Letunic et al. NUCLEIC ACIDS RESEARCH
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
- (2011) P. Di Tommaso et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
- (2010) Nancy Y. Yu et al. BIOINFORMATICS
- DendroPy: a Python library for phylogenetic computing
- (2010) J. Sukumaran et al. BIOINFORMATICS
- The BatR/BatS Two-Component Regulatory System Controls the Adaptive Response of Bartonella henselae during Human Endothelial Cell Infection
- (2010) M. Quebatte et al. JOURNAL OF BACTERIOLOGY
- Agrobacterium tumefaciens ExoR represses succinoglycan biosynthesis and is required for biofilm formation and motility
- (2010) A. D. Tomlinson et al. MICROBIOLOGY-SGM
- Autoregulation of Sinorhizobium meliloti exoR gene expression
- (2010) H.-Y. Lu et al. MICROBIOLOGY-SGM
- The Cpx envelope stress response both facilitates and inhibits elaboration of the enteropathogenic Escherichia coli bundle-forming pilus
- (2010) Stefanie L. Vogt et al. MOLECULAR MICROBIOLOGY
- Sinorhizobium meliloti1021 Loss-of-Function Deletion Mutation inchvIand Its Phenotypic Characteristics
- (2010) Chunxia Wang et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- GenBank
- (2010) D. A. Benson et al. NUCLEIC ACIDS RESEARCH
- Transcriptome Analysis of the Brucella abortus BvrR/BvrS Two-Component Regulatory System
- (2010) Cristina Viadas et al. PLoS One
- The three-component signalling system HbpS–SenS–SenR as an example of a redox sensing pathway in bacteria
- (2009) Darío Ortiz de Orué Lucana et al. AMINO ACIDS
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination
- (2009) Anna Lobley et al. BIOINFORMATICS
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- Characterization of a Gene Family of Outer Membrane Proteins (ropB) in Rhizobium leguminosarum bv. viciae VF39SM and the Role of the Sensor Kinase ChvG in Their Regulation
- (2009) D. L. Foreman et al. JOURNAL OF BACTERIOLOGY
- Identification of Direct Transcriptional Target Genes of ExoS/ChvI Two-Component Signaling in Sinorhizobium meliloti
- (2009) E. J. Chen et al. JOURNAL OF BACTERIOLOGY
- Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella
- (2009) J. T. Foster et al. JOURNAL OF BACTERIOLOGY
- Null mutations inSinorhizobium meliloti exoSandchvIdemonstrate the importance of this two-component regulatory system for symbiosis
- (2009) Louise Bélanger et al. MOLECULAR MICROBIOLOGY
- Sequence context-specific profiles for homology searching
- (2009) A. Biegert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Building and assessing atomic models of proteins from structural templates: Learning and benchmarks
- (2009) Brinda Kizhakke Vallat et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Molecular Determinants of a Symbiotic Chronic Infection
- (2008) Katherine E. Gibson et al. Annual Review of Genetics
- Coordinating Nodule Morphogenesis with Rhizobial Infection in Legumes
- (2008) Giles E.D. Oldroyd et al. Annual Review of Plant Biology
- OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar
- (2008) Håkan Viklund et al. BIOINFORMATICS
- The periplasmic regulator ExoR inhibits ExoS/ChvI two-component signalling inSinorhizobium meliloti
- (2008) Esther J. Chen et al. MOLECULAR MICROBIOLOGY
- Sinorhizobium melilotiRegulator MucR Couples Exopolysaccharide Synthesis and Motility
- (2008) Christelle Bahlawane et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- A template-finding algorithm and a comprehensive benchmark for homology modeling of proteins
- (2008) Brinda Kizhakke Vallat et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started