Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant

Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov.

(2014) A. Sen et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

What stories can the Frankia genomes start to tell us?

(2013) Louis S Tisa et al.   JOURNAL OF BIOSCIENCES

First report on the occurrence of the uncultivated cluster 2 Frankia microsymbionts in soil outside the native actinorhizal host range area

(2013) Imen Nouioui et al.   JOURNAL OF BIOSCIENCES

From β- to α-Proteobacteria: The Origin and Evolution of Rhizobial Nodulation Genes nodIJ

(2013) Seishiro Aoki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Three keys to the radiation of angiosperms into freezing environments

(2013) Amy E. Zanne et al.   NATURE

Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants

(2013) Giles E. D. Oldroyd   NATURE REVIEWS MICROBIOLOGY

Short-chain chitin oligomers from arbuscular mycorrhizal fungi trigger nuclear Ca2+spiking inMedicago truncatularoots and their production is enhanced by strigolactone

(2013) Andrea Genre et al.   NEW PHYTOLOGIST

The Independent Acquisition of Plant Root Nitrogen-Fixing Symbiosis in Fabids Recruited the Same Genetic Pathway for Nodule Organogenesis

(2013) Sergio Svistoonoff et al.   PLoS One

Comparison of the Nodule vs. Root Transcriptome of the Actinorhizal Plant Datisca glomerata: Actinorhizal Nodules Contain a Specific Class of Defensins

(2013) Irina V. Demina et al.   PLoS One

Mammalian cell entry genes in Streptomyces may provide clues to the evolution of bacterial virulence

(2013) Laura C. Clark et al.   Scientific Reports

Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica

(2012) W.-M. Chen et al.   MICROBIOLOGY-SGM

Distribution, formation and regulation of gas vesicles

(2012) Felicitas Pfeifer   NATURE REVIEWS MICROBIOLOGY

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

The diversity of actinorhizal symbiosis

(2012) Katharina Pawlowski et al.   PROTOPLASMA

Phylogeny of members of the Frankia genus based on gyrB, nifH and glnII sequences

(2011) Imen Nouioui et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Significant Natural Product Biosynthetic Potential of Actinorhizal Symbionts of the Genus Frankia, as Revealed by Comparative Genomic and Proteomic Analyses

(2011) Daniel W. Udwary et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches

(2011) Filip Husník et al.   BMC BIOLOGY

New perspectives on nodule nitrogen assimilation in actinorhizal symbioses

(2011) Alison M. Berry et al.   FUNCTIONAL PLANT BIOLOGY

Genome Sequence of "Candidatus Frankia datiscae" Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata

(2011) T. Persson et al.   JOURNAL OF BACTERIOLOGY

Novel root nodule bacteria belonging to the genus Caulobacter

(2011) P. Edulamudi et al.   LETTERS IN APPLIED MICROBIOLOGY

Phylogenetic Perspectives on the Origins of Nodulation

(2011) Jeff J. Doyle   MOLECULAR PLANT-MICROBE INTERACTIONS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Estimation of the Glomus intraradices nuclear DNA content

(2011) Kinga A. Sędzielewska et al.   NEW PHYTOLOGIST

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Transcriptomics of Actinorhizal Symbioses Reveals Homologs of the Whole Common Symbiotic Signaling Cascade

(2011) V. Hocher et al.   PLANT PHYSIOLOGY

Multilocus sequence analysis of phytopathogenic species of the genus Streptomyces

(2010) D. P. Labeda   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

16S–23S rRNA Intergenic Spacer Region Variability in the Genus Frankia

(2010) Faten Ghodhbane-Gtari et al.   MICROBIAL ECOLOGY

TheFrankia alniSymbiotic Transcriptome

(2010) Nicole Alloisio et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza

(2010) Fabienne Maillet et al.   NATURE

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium

(2010) Liang Ran et al.   PLoS One

LysM-Type Mycorrhizal Receptor Recruited for Rhizobium Symbiosis in Nonlegume Parasponia

(2010) R. Op den Camp et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Complete genome sequence of Stackebrandtia 
nassauensis type strain (LLR-40K-21T)

(2010) Chris Munk et al.   Standards in Genomic Sciences

Complete genome sequence of Geodermatophilus obscurus type strain (G-20T)

(2010) Natalia Ivanova et al.   Standards in Genomic Sciences

Complete genome sequence of Nakamurella multipartita type strain (Y-104T)

(2010) Hope Tice et al.   Standards in Genomic Sciences

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

(2009) Jochen Blom et al.   BMC BIOINFORMATICS

Evolutionary genomics of LysM genes in land plants

(2009) Xue-Cheng Zhang et al.   BMC EVOLUTIONARY BIOLOGY

Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia

(2009) Derek M Bickhart et al.   BMC GENOMICS

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

(2009) P. D. Karp et al.   BRIEFINGS IN BIOINFORMATICS

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations

(2009) R. D. Barabote et al.   GENOME RESEARCH

Methylophilus rhizosphaerae sp. nov., a restricted facultative methylotroph isolated from rice rhizosphere soil

(2009) M. Madhaiyan et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Burkholderiaspecies are ancient symbionts of legumes

(2009) CYRIL BONTEMPS et al.   MOLECULAR ECOLOGY

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2009) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Legumes regulate Rhizobium bacteroid development and persistence by the supply of branched-chain amino acids

(2009) J. Prell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Broad-Host-Range Expression Vectors with Tightly Regulated Promoters and Their Use To Examine the Influence of TraR and TraM Expression on Ti Plasmid Quorum Sensing

(2008) S. R. Khan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571

(2008) Kyung-Bum Lee et al.   BMC GENOMICS

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY

SymRK defines a common genetic basis for plant root endosymbioses with arbuscular mycorrhiza fungi, rhizobia, and Frankiabacteria

(2008) H. Gherbi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Adaptation of a Plant Receptor- Kinase Paved the Way for the Evolution of Intracellular Root Symbioses with Bacteria

(2008) Katharina Markmann et al.   PLOS BIOLOGY