Environmental Filtering of Microbial Communities in Agricultural Soil Shifts with Crop Growth

Plant nitrogen uptake drives rhizosphere bacterial community assembly during plant growth

(2015) Colin W. Bell et al.   SOIL BIOLOGY & BIOCHEMISTRY

Establishment and Short-term Productivity of Annual and Perennial Bioenergy Crops Across a Landscape Gradient

(2014) Danielle M. Wilson et al.   BioEnergy Research

When should species richness be energy limited, and how would we know?

(2014) Allen H. Hurlbert et al.   ECOLOGY LETTERS

Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

(2014) Mengxin Zhao et al.   ISME Journal

Responses of Bacterial Communities in Arable Soils in a Rice-Wheat Cropping System to Different Fertilizer Regimes and Sampling Times

(2014) Jun Zhao et al.   PLoS One

Effects of actinobacteria on plant disease suppression and growth promotion

(2013) Sasikumar Arunachalam Palaniyandi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Physiological shifts in the microbial community drive changes in enzyme activity in a perennial agroecosystem

(2013) Sarah K. Hargreaves et al.   BIOGEOCHEMISTRY

Rhizosphere bacterial communities associated with long-lived perennial prairie plants vary in diversity, composition, and structure

(2013) N. Rosenzweig et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Altered Belowground Carbon Cycling Following Land-Use Change to Perennial Bioenergy Crops

(2013) Kristina J. Anderson-Teixeira et al.   ECOSYSTEMS

Host signature effect on plant root-associated microbiomes revealed through analyses of residentvs. active communities

(2013) Maya Ofek et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrogen deposition weakens plant-microbe interactions in grassland ecosystems

(2013) Cunzheng Wei et al.   GLOBAL CHANGE BIOLOGY

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

(2013) Thomas R Turner et al.   ISME Journal

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Development of a simple root model to study the effects of single exudates on the development of bacterial community structure

(2013) Maren Ziegler et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Topographic and soil influences on root productivity of three bioenergy cropping systems

(2013) Todd A. Ontl et al.   NEW PHYTOLOGIST

Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria

(2013) Asunción Martínez et al.   Frontiers in Microbiology

Controls on soil microbial community stability under climate change

(2013) Franciska T. de Vries et al.   Frontiers in Microbiology

Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil

(2012) Yuejian Mao et al.   ENVIRONMENTAL MICROBIOLOGY

Plant–microbial linkages and ecosystem nitrogen retention: lessons for sustainable agriculture

(2012) Franciska T de Vries et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning

(2011) Ella Wessén et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Changes in N-Transforming Archaea and Bacteria in Soil during the Establishment of Bioenergy Crops

(2011) Yuejian Mao et al.   PLoS One

Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties

(2011) Kamlesh Jangid et al.   SOIL BIOLOGY & BIOCHEMISTRY

Evaluation of actinomycete strains for key traits related with plant growth promotion and mycorrhiza helping activities

(2010) Marcela Franco-Correa et al.   APPLIED SOIL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems

(2010) Kelly S. Ramirez et al.   ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Biogeography and habitat modelling of high-alpine bacteria

(2010) Andrew J. King et al.   Nature Communications

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Plant species influence microbial diversity and carbon allocation in the rhizosphere

(2009) Natalia Ladygina et al.   SOIL BIOLOGY & BIOCHEMISTRY

Influence of plant developmental stage on microbial community structure and activity in the rhizosphere of three field crops

(2008) Ashley Houlden et al.   FEMS MICROBIOLOGY ECOLOGY

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY