Telomere binding protein TRB1 is associated with promoters of translation machinery genes in vivo

PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data

(2014) Yanxiao Zhang et al.   BIOINFORMATICS

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

(2014) Li Shen et al.   BMC GENOMICS

Extending the model of Arabidopsis telomere length and composition across Brassicaceae

(2014) Andrew D. L. Nelson et al.   CHROMOSOME RESEARCH

Elucidation of the DNA End-Replication Problem in Saccharomyces cerevisiae

(2014) Julien Soudet et al.   MOLECULAR CELL

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase

(2014) Petra Procházková Schrumpfová et al.   PLANT JOURNAL

Differential transcript accumulation and subcellular localization of Arabidopsis ribosomal proteins

(2014) Raghavendra P. Savada et al.   PLANT SCIENCE

Normalization of ChIP-seq data with control

(2012) Kun Liang et al.   BMC BIOINFORMATICS

A TRF1-controlled common fragile site containing interstitial telomeric sequences

(2012) Nazario Bosco et al.   CHROMOSOMA

Using the Telobox to Search for Plant Telomere Binding Proteins

(2012) Vratislav Peska et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Chromosome end protection by blunt-ended telomeres

(2012) A. Kazda et al.   GENES & DEVELOPMENT

Mitochondrial Localization of Telomeric Protein TIN2 Links Telomere Regulation to Metabolic Control

(2012) Liuh-Yow Chen et al.   MOLECULAR CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Removal of Shelterin Reveals the Telomere End-Protection Problem

(2012) A. Sfeir et al.   SCIENCE

Distribution of short interstitial telomere motifs in two plant genomes: putative origin and function

(2011) Christine Gaspin et al.   BMC PLANT BIOLOGY

The human TTAGGG repeat factors 1 and 2 bind to a subset of interstitial telomeric sequences and satellite repeats

(2011) Thomas Simonet et al.   CELL RESEARCH

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

Non-telomeric activities of telomerase

(2011) Jana Majerská et al.   Molecular BioSystems

Evolution of linear chromosomes and multipartite genomes in yeast mitochondria

(2011) Matus Valach et al.   NUCLEIC ACIDS RESEARCH

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

(2010) J. Macas et al.   BIOINFORMATICS

POT1–TPP1 enhances telomerase processivity by slowing primer dissociation and aiding translocation

(2010) Chrysa M Latrick et al.   EMBO JOURNAL

Telomere-independent Rap1 is an IKK adaptor and regulates NF-κB-dependent gene expression

(2010) Hsiangling Teo et al.   NATURE CELL BIOLOGY

Mammalian Rap1 controls telomere function and gene expression through binding to telomeric and extratelomeric sites

(2010) Paula Martinez et al.   NATURE CELL BIOLOGY

Two RNA subunits and POT1a are components of Arabidopsis telomerase

(2010) C. Cifuentes-Rojas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian Telomeres Resemble Fragile Sites and Require TRF1 for Efficient Replication

(2009) Agnel Sfeir et al.   CELL

AtTRB1, a telomeric DNA-binding protein from Arabidopsis, is concentrated in the nucleolus and shows highly dynamic association with chromatin

(2009) Martina Dvořáčková et al.   PLANT JOURNAL

Single-Myb-histone proteins fromArabidopsis thaliana: a quantitative study of telomere-binding specificity and kinetics

(2008) Ctirad Hofr et al.   BIOCHEMICAL JOURNAL

Nontelomeric TRF2-REST Interaction Modulates Neuronal Gene Silencing and Fate of Tumor and Stem Cells

(2008) Peisu Zhang et al.   CURRENT BIOLOGY

Mapping of interaction domains of putative telomere-binding proteins AtTRB1 and AtPOT1b fromArabidopsis thaliana

(2008) Petra Procházková Schrumpfová et al.   FEBS LETTERS

Functional characterization of domains in AtTRB1, a putative telomere-binding protein in Arabidopsis thaliana

(2008) Iva Mozgová et al.   PHYTOCHEMISTRY

Chromosomal Phylogeny and Karyotype Evolution in x=7 Crucifer Species (Brassicaceae)

(2008) T. Mandakova et al.   PLANT CELL

Intronic noncoding RNAs and splicing

(2008) John W.S. Brown et al.   TRENDS IN PLANT SCIENCE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY

Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities

(2004) Shingo Hanaoka et al.   PROTEIN SCIENCE