Cell-specific transcriptomic analyses of three-dimensional shoot development in the mossPhyscomitrella patens

Cell cycle reentry from the late S phase: implications from stem cell formation in the moss Physcomitrella patens

(2015) Masaki Ishikawa et al.   JOURNAL OF PLANT RESEARCH

Plasma Membrane-Targeted PIN Proteins Drive Shoot Development in a Moss

(2014) Tom A. Bennett et al.   CURRENT BIOLOGY

The ERECTA receptor kinase regulates Arabidopsis shoot apical meristem size, phyllotaxy and floral meristem identity

(2014) T. Mandel et al.   DEVELOPMENT

WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens

(2014) K. Sakakibara et al.   DEVELOPMENT

Transcriptomic Evidence for the Evolution of Shoot Meristem Function in Sporophyte-Dominant Land Plants through Concerted Selection of Ancestral Gametophytic and Sporophytic Genetic Programs

(2014) Margaret H. Frank et al.   MOLECULAR BIOLOGY AND EVOLUTION

Defective Kernel 1 (DEK1) is required for three-dimensional growth inPhyscomitrella patens

(2014) Pierre-François Perroud et al.   NEW PHYTOLOGIST

The chromatin landscape of the mossPhyscomitrella patensand its dynamics during development and drought stress

(2014) Thomas Widiez et al.   PLANT JOURNAL

Genetic Analysis of DEFECTIVE KERNEL1 Loop Function in Three-Dimensional Body Patterning in Physcomitrella patens

(2014) V. Demko et al.   PLANT PHYSIOLOGY

Growth Mechanisms in Tip-Growing Plant Cells

(2013) Caleb M. Rounds et al.   Annual Review of Plant Biology

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

(2013) Andreas D Zimmer et al.   BMC GENOMICS

Eight types of stem cells in the life cycle of the moss Physcomitrella patens

(2013) Rumiko Kofuji et al.   CURRENT OPINION IN PLANT BIOLOGY

Network Theory Inspired Analysis of Time-Resolved Expression Data Reveals Key Players Guiding P. patens Stem Cell Development

(2013) Hauke Busch et al.   PLoS One

Recruitment and remodeling of an ancient gene regulatory network during land plant evolution

(2013) Nuno D. Pires et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

KNOX2 Genes Regulate the Haploid-to-Diploid Morphological Transition in Land Plants

(2013) K. Sakakibara et al.   SCIENCE

Physcomitrella patens: a model for tip cell growth and differentiation

(2012) Luis Vidali et al.   CURRENT OPINION IN PLANT BIOLOGY

AP2-type transcription factors determine stem cell identity in the moss Physcomitrella patens

(2012) T. Aoyama et al.   DEVELOPMENT

DICER-LIKE3 Activity in Physcomitrella patens DICER-LIKE4 Mutants Causes Severe Developmental Dysfunction and Sterility

(2012) M. Asif Arif et al.   Molecular Plant

miR156 and miR390 Regulate tasiRNA Accumulation and Developmental Timing in Physcomitrella patens

(2012) S. H. Cho et al.   PLANT CELL

Live imaging of DORNRÖSCHEN and DORNRÖSCHEN-LIKE promoter activity reveals dynamic changes in cell identity at the microcallus surface of Arabidopsis embryonic suspensions

(2012) M. Cole et al.   PLANT CELL REPORTS

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens

(2012) Lihong Xiao et al.   PLoS One

Digital Gene Expression Profiling by 5′-End Sequencing of cDNAs during Reprogramming in the Moss Physcomitrella patens

(2012) Tomoaki Nishiyama et al.   PLoS One

Mechanisms of stomatal development: an evolutionary view

(2012) Anne Vatén et al.   EvoDevo

A High-Throughput Method for Illumina RNA-Seq Library Preparation

(2012) Ravi Kumar et al.   Frontiers in Plant Science

Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens

(2011) Lihong Xiao et al.   BMC PLANT BIOLOGY

Land Plants Acquired Active Stomatal Control Early in Their Evolutionary History

(2011) Elizabeth M. Ruszala et al.   CURRENT BIOLOGY

Auxin promotes the transition from chloronema to caulonema in moss protonema by positively regulating PpRSL1and PpRSL2 in Physcomitrella patens

(2011) Geupil Jang et al.   NEW PHYTOLOGIST

PhyscomitrellaCyclin-Dependent Kinase A Links Cell Cycle Reactivation to Other Cellular Changes during Reprogramming of Leaf Cells

(2011) Masaki Ishikawa et al.   PLANT CELL

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

(2010) James H Bullard et al.   BMC BIOINFORMATICS

Transcriptional Control of Gene Expression by MicroRNAs

(2010) Basel Khraiwesh et al.   CELL

KNOX genes: versatile regulators of plant development and diversity

(2010) A. Hay et al.   DEVELOPMENT

MicroRNA534a control of BLADE-ON-PETIOLE 1 and 2 mediates juvenile-to-adult gametophyte transition in Physcomitrella patens

(2010) Omar Saleh et al.   PLANT JOURNAL

Local Cues and Asymmetric Cell Divisions Underpin Body Plan Transitions in the Moss Physcomitrella patens

(2009) C. Jill Harrison et al.   CURRENT BIOLOGY

Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution

(2009) A. Mosquna et al.   DEVELOPMENT

The evolutionary development of plant body plans

(2009) Karl J. Niklas et al.   FUNCTIONAL PLANT BIOLOGY

The evolution of the land plant life cycle

(2009) Karl J. Niklas et al.   NEW PHYTOLOGIST

A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution

(2009) Y. Okano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Class 1 KNOX genes are not involved in shoot development in the mossPhyscomitrella patensbut do function in sporophyte development

(2008) Keiko Sakakibara et al.   EVOLUTION & DEVELOPMENT

SCREAM/ICE1 and SCREAM2 Specify Three Cell-State Transitional Steps Leading to Arabidopsis Stomatal Differentiation

(2008) M. M. Kanaoka et al.   PLANT CELL

Evolution of plant microRNAs and their targets

(2008) Michael J. Axtell et al.   TRENDS IN PLANT SCIENCE