Indirect gradient analysis by Markov-chain Monte Carlo

Row–column interaction models, with an R implementation

(2014) Thomas W. Yee et al.   COMPUTATIONAL STATISTICS

Model-based thinking for community ecology

(2014) David I. Warton et al.   PLANT ECOLOGY

Model-based approaches to unconstrained ordination

(2014) Francis K.C. Hui et al.   Methods in Ecology and Evolution

Understanding co-occurrence by modelling species simultaneously with a Joint Species Distribution Model (JSDM)

(2014) Laura J. Pollock et al.   Methods in Ecology and Evolution

Multivariate methods using mixtures: Correspondence analysis, scaling and pattern-detection

(2013) Shirley Pledger et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

More than the sum of the parts: forest climate response from joint species distribution models

(2013) James S. Clark et al.   ECOLOGICAL APPLICATIONS

The role of functional traits in species distributions revealed through a hierarchical model

(2011) Laura J. Pollock et al.   ECOGRAPHY

Random-effects ordination: describing and predicting multivariate correlations and co-occurrences

(2011) Steven C. Walker et al.   ECOLOGICAL MONOGRAPHS

Generalized linear mixed models for phylogenetic analyses of community structure

(2011) Anthony R. Ives et al.   ECOLOGICAL MONOGRAPHS

AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

(2011) David A. Fournier et al.   OPTIMIZATION METHODS & SOFTWARE

Regularized Sandwich Estimators for Analysis of High-Dimensional Data Using Generalized Estimating Equations

(2010) David I. Warton   BIOMETRICS

Modeling species co-occurrence by multivariate logistic regression generates new hypotheses on fungal interactions

(2010) Otso Ovaskainen et al.   ECOLOGY

Making more out of sparse data: hierarchical modeling of species communities

(2010) Otso Ovaskainen et al.   ECOLOGY