Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants

NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism

(2015) Cristiane Zorzatto et al.   NATURE

Differential gene expression analysis using coexpression and RNA-Seq data

(2013) Ei-Wen Yang et al.   BIOINFORMATICS

Peptide Aptamers That Bind to Geminivirus Replication Proteins Confer a Resistance Phenotype to Tomato Yellow Leaf Curl Virus and Tomato Mottle Virus Infection in Tomato

(2013) M. I. Reyes et al.   JOURNAL OF VIROLOGY

Comparative Transcriptome Profiling of a Resistant vs. Susceptible Tomato (Solanum lycopersicum) Cultivar in Response to Infection by Tomato Yellow Leaf Curl Virus

(2013) Tianzi Chen et al.   PLoS One

Further characterization of tomato-infecting begomoviruses in Brazil

(2012) Leonardo C. Albuquerque et al.   ARCHIVES OF VIROLOGY

The tomato RLK superfamily: phylogeny and functional predictions about the role of the LRRII-RLK subfamily in antiviral defense

(2012) Tetsu Sakamoto et al.   BMC PLANT BIOLOGY

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

Evaluation of DNA fragments covering the entire genome of a monopartite begomovirus for induction of viral resistance in transgenic plants via gene silencing

(2011) Ching-Yi Lin et al.   TRANSGENIC RESEARCH

Antibegomoviral activity of the agrobacterial virulence protein VirE2

(2011) Sukumaran Sunitha et al.   VIRUS GENES

Engineering cotton (Gossypium hirsutum L.) for resistance to cotton leaf curl disease using viral truncated AC1 DNA sequences

(2011) Jamil A. Hashmi et al.   VIRUS GENES

baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data

(2010) Thomas J Hardcastle et al.   BMC BIOINFORMATICS

NSP-interacting kinase, NIK: a transducer of plant defence signalling

(2010) Anésia A. Santos et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

First transgenic geminivirus-resistant plant in the field

(2009) Francisco J L Aragão et al.   NATURE BIOTECHNOLOGY

Conserved Threonine Residues within the A-Loop of the Receptor NIK Differentially Regulate the Kinase Function Required for Antiviral Signaling

(2009) Anésia A. Santos et al.   PLoS One

Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil

(2008) Gloria P. Castillo-Urquiza et al.   ARCHIVES OF VIROLOGY

A cautionary note on pathogen-derived sequences

(2008) Alessandra Lucioli et al.   NATURE BIOTECHNOLOGY

A novel nucleocytoplasmic traffic GTPase identified as a functional target of the bipartite geminivirus nuclear shuttle protein

(2008) Claudine M. Carvalho et al.   PLANT JOURNAL

The ribosomal protein L10/QM-like protein is a component of the NIK-mediated antiviral signaling

(2008) Carolina S. Rocha et al.   VIROLOGY

Regulated Nuclear Trafficking of rpL10A Mediated by NIK1 Represents a Defense Strategy of Plant Cells against Virus

(2008) Claudine M. Carvalho et al.   PLoS Pathogens