Web Tools for Rice Transcriptome Analyses

The Association of Multiple Interacting Genes with Specific Phenotypes in Rice Using Gene Coexpression Networks

(2010) Stephen P. Ficklin et al.   PLANT PHYSIOLOGY

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

The Rice Kinase Phylogenomics Database: a guide for systematic analysis of the rice kinase super-family

(2010) Ki-Hong Jung et al.   TRENDS IN PLANT SCIENCE

RiceArrayNet: A Database for Correlating Gene Expression from Transcriptome Profiling, and Its Application to the Analysis of Coexpressed Genes in Rice

(2009) T.-H. Lee et al.   PLANT PHYSIOLOGY

How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry

(2009) Tobias Kind et al.   PLoS One

Genevestigator Transcriptome Meta-Analysis and Biomarker Search using Rice and Barley Gene Expression Databases

(2008) Philip Zimmermann et al.   Molecular Plant

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis

(2008) Qi Zheng et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

A Rice Kinase-Protein Interaction Map

(2008) X. Ding et al.   PLANT PHYSIOLOGY

Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy

(2008) Ki-Hong Jung et al.   PLoS One

Identification and Functional Analysis of Light-Responsive Unique Genes and Gene Family Members in Rice

(2008) Ki-Hong Jung et al.   PLoS Genetics