Article
Agronomy
Ferran Sanchez-Sanuy, Roberto Mateluna-Cuadra, Keisuke Tomita, Kazunori Okada, Gian Attilio Sacchi, Sonia Campo, Blanca San Segundo
Summary: Exposure to high iron enhances resistance to Magnaporthe oryzae infection in rice plants, possibly through upregulating defense-related genes and increasing production of phytoalexins. The infection also modulates the expression of genes involved in iron homeostasis. Iron and reactive oxygen species colocalize at infection sites. Understanding the crosstalk between iron signaling and immune signaling holds great potential for improving blast resistance in rice.
Article
Biochemistry & Molecular Biology
Taswar Ahsan, Bingxue Li, Yuanhua Wu, Zijing Li
Summary: In this study, a new method was used to fabricate zinc oxide nanoparticles (ZnONPs) by mixing alkalescent nucleoside antibiotics with zinc hexanitrate. The alkalescent nucleoside AN03 was separated and purified from Streptomyces koyanogensis using macroporous resin and column chromatography. The ZnONPs were characterized and showed strong inhibitory effects against Magnaporthe grisea, causing breakage in hyphae and damage to the cells. Greenhouse experiments demonstrated that ZnONPs could control rice blast disease by 98% and promote rice plant growth. This study suggests that ZnONPs could be a potent biocontrol agent in rice blast disease management.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Plant Sciences
Kirti Arora, Amit Kumar Rai, B. N. Devanna, Himanshu Dubey, Alka Narula, Tilak Raj Sharma
Summary: The broad-spectrum resistance gene Pi54 in rice confers resistance against multiple isolates of Magnaporthe oryzae, with a variety of miRNAs identified to play a role in balancing the interaction between different defense response genes during Pi54 mediated resistance in the rice line Taipei309(Pi54). Additionally, the study suggests that the Pi54 gene mediated blast resistance in rice is influenced by multiple microRNAs regulating the immunity pathways, resulting in an incompatible host-pathogen interaction.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS
(2021)
Article
Plant Sciences
Yanxin Wang, Muxing Liu, Xiaowen Wang, Lingli Zhong, Guolong Shi, Ye Xu, Yangqing Li, Ruolin Li, Yan Huang, Xianfeng Ye, Zhoukun Li, Zhongli Cui
Summary: This study demonstrates the essential role of Gns6 in the defensive response of rice against pathogenic fungi, with its high specific activity and ability to degrade various polysaccharides, which have significant implications for the plant immune system.
JOURNAL OF PLANT PHYSIOLOGY
(2021)
Article
Plant Sciences
Ling-Li Zhang, Yan-Yan Huang, Ya-Ping Zheng, Xin-Xian Liu, Shi-Xin Zhou, Xue-Mei Yang, Shou-Lan Liu, Yan Li, Jin-Lu Li, Sheng-Li Zhao, He Wang, Yun-Peng Ji, Ji-Wei Zhang, Mei Pu, Zhi-Xue Zhao, Jing Fan, Wen-Ming Wang
Summary: The microRNA Osa-miR535 targets OsSPL4 to suppress rice immunity against Magnaporthe oryzae, while overexpression of OsSPL4 enhances blast disease resistance. Additionally, OsSPL4 promotes the expression of GH3.2, which is involved in plant immunity.
Review
Biochemistry & Molecular Biology
Zhiquan Liu, Yujun Zhu, Huanbin Shi, Jiehua Qiu, Xinhua Ding, Yanjun Kou
Summary: Rice is an important food crop, but its production is threatened by various diseases. Breeding resistant rice varieties, especially those with broad-spectrum disease resistance genes, is an effective method to control pathogens. Researchers have focused on identifying rice broad-spectrum disease resistance genes in recent years, providing new genetic resources for breeding resistant rice varieties.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Agronomy
Phanchita Vejchasarn, Jeremy R. Shearman, Usawadee Chaiprom, Yotwarit Phansenee, Arissara Suthanthangjai, Jirapong Jairin, Varapong Chamarerk, Tatpong Tulyananda, Chainarong Amornbunchornvej
Summary: The study identified five subpopulations in the population structure of Thai rice, grouping individuals based on location. Each subpopulation exhibits unique genetic patterns, agronomic traits, and environmental conditions. This research can serve as a valuable reference for breeders and researchers interested in Thai rice.
Article
Plant Sciences
Gloria Escola, Victor M. Gonzalez-Miguel, Sonia Campo, Mar Catala-Forner, Concha Domingo, Luis Marques, Blanca San Segundo
Summary: In this study, a blast-resistant rice breeding line, COPSEMAR9, was obtained through hybridization and a high-quality genome sequence was obtained. The presence of rice blast resistance genes and defense-related genes, as well as miRNAs potentially contributing to blast resistance, were identified in COPSEMAR9.
Article
Biotechnology & Applied Microbiology
Fanwei Meng, Xunmei Zheng, Jia Wang, Tiancheng Qiu, Qingya Yang, Kexing Fang, Vijai Bhadauria, You-Liang Peng, Wensheng Zhao
Summary: This study uncovers a novel mechanism whereby the GSK2-OsDLA-OsWRKY53 module coordinates blast resistance and plant architecture via BR signalling in rice. The GRAS transcription factor OsDLA interacts with the negative regulator GSK2 to regulate BR signaling pathway, and also interacts with the WRKY transcription factor OsWRKY53, contributing to blast resistance and plant architecture.
PLANT BIOTECHNOLOGY JOURNAL
(2023)
Article
Plant Sciences
Jiehua Qiu, Zhiquan Liu, Junhui Xie, Bo Lan, Zhenan Shen, Huanbin Shi, Fucheng Lin, Xiangling Shen, Yanjun Kou
Summary: This study revealed that high ambient humidity enhances the development of blast disease in rice plants and compromises the plants' resistance to pathogens, mainly by suppressing the activation of ethylene biosynthesis and signaling pathway. These findings provide insights for novel strategies to control rice blast disease under global environmental changes.
PLANT CELL AND ENVIRONMENT
(2022)
Article
Agronomy
Jingfang Dong, Lian Zhou, Aiqing Feng, Shaohong Zhang, Hua Fu, Luo Chen, Junliang Zhao, Tifeng Yang, Wu Yang, Yamei Ma, Jian Wang, Xiaoyuan Zhu, Qing Liu, Bin Liu
Summary: The study confirmed that OsOXO2, OsOXO3 and OsOXO4 genes play crucial roles in panicle blast resistance in rice by regulating H2O2 accumulation and expression levels of PR genes. The resistance mediated by these genes is associated with the activation of JA and ABA signaling pathways, while suppressing the SA signaling pathway.
Review
Biochemistry & Molecular Biology
Radheshyam Yadav, Wusirika Ramakrishna
Summary: This article discusses the interplay between nutrient signaling and immune signaling pathways in rice and the role of microRNAs in pathogenic/symbiotic interactions. It also highlights the importance of understanding how disease resistance is regulated by nutrient status in order to develop new strategies for crop protection.
MOLECULAR BIOTECHNOLOGY
(2023)
Article
Plant Sciences
Dewei Yang, Shengping Li, Yueping Xiao, Ling Lu, Zichao Zheng, Dingzhong Tang, Haitao Cui
Summary: The study highlights the importance of rapid, high-amplitude transcriptional reprogramming in rice defense against blast fungus, with ribosome- and protein translation-related genes being significantly enriched among differentially expressed genes at 12 hpi in both susceptible and resistant cultivars. A core set of genes involved in response to both biotic and abiotic stress was identified, including metallothionein genes positively regulating rice resistance and a peroxidase gene negatively regulating it. This study provides novel insights into transcriptional reprogramming and serves as a valuable resource for functional studies on rice immune signaling components in resistance to blast disease.
PLANT CELL AND ENVIRONMENT
(2021)
Article
Agronomy
Xiaohui Xu, Han Wang, Jiqin Liu, Shuying Han, Miaomiao Lin, Zejian Guo, Xujun Chen
Summary: In this study, the researchers characterized the interaction of OsWRKY62 and OsWRKY76 with importins, OsIM alpha 1a and OsIM alpha 1b, for nuclear translocation. They found that OsWRKY62.1 has a nuclear localization signal (NLS) and a nuclear export signal (NES), and these signals are responsible for the translocation of OsWRKY62.1 to the nucleus. The researchers also discovered that OsIM alpha 1a and OsIM alpha 1b enhance resistance to M. oryzae, while their knockout mutants decrease resistance to the pathogen.
Review
Biochemistry & Molecular Biology
Muhammad Usama Younas, Guanda Wang, Haibo Du, Yi Zhang, Irshad Ahmad, Nimra Rajput, Mingyou Li, Zhiming Feng, Keming Hu, Nasr Ullah Khan, Wenya Xie, Muhammad Qasim, Zongxiang Chen, Shimin Zuo
Summary: Rice is a staple food for many people worldwide, but its yield is threatened by biotic stresses such as rice blast caused by Magnaporthe oryzae. Developing resistant varieties is an effective approach to control this devastating disease. Researchers have identified several resistance genes and non-pathogenic genes, which aid breeders in developing resistant varieties and pathologists in monitoring pathogenic isolates.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Materials Science, Textiles
Md Al-Mamun, Mohd Y. Rafii, Yusuff Oladosu, Azizah Binti Misran, Zulkarami Berahim, Zaiton Ahmad, Md Mahmudul Hasan Khan, Fatai Arolu
Summary: Correlation and path coefficient analysis were conducted to determine selection criteria for higher fiber yield in thirty-one kenaf mutant lines. The study found that traits such as plant height, middle diameter, and fresh stem weight without leaves and pod had significant direct and indirect effects on fiber yield.
JOURNAL OF NATURAL FIBERS
(2022)
Article
Multidisciplinary Sciences
Md Al-Mamun, Mohd Y. Rafii, Azizah Binti Misran, Zulkarami Berahim, Zaiton Ahmad, Md Mahmudul Hasan Khan, Yusuff Oladosu
Summary: The study revealed the presence of both additive and non-additive gene actions in the inheritance of kenaf hybrids, with additive genes playing a predominant role. Parental lines P-1, P-3, and P-4 showed outstanding combining ability, promising for future improvement in kenaf breeding programmes.
SCIENTIFIC REPORTS
(2022)
Article
Agronomy
Mayakaduwege Amoda Priyangi Mayakaduwa, Yusop Mohd Rafii, Roslan Ismail, Liyana Rallage Mahesh Chaminda Liyanage, Minninga Geethika Neranjani Rupasinghe, Mohamed Musa Hanafi
Summary: The enrichment of soil phosphorus (P) due to the increased use of P fertilizer in crop production has led to eutrophication and economic consequences. Monitoring and managing soil P reactions is crucial for sustainable soil P management. This study aimed to characterize P sorption and desorption capacities of different soils and determine the distribution of added P among various P pools. The results showed that soil pH and exchangeable aluminum were correlated with P sorption capacity and desorption. During incubation, a portion of the added P became non-extractable, while another portion became more soluble.
COMMUNICATIONS IN SOIL SCIENCE AND PLANT ANALYSIS
(2023)
Review
Biochemistry & Molecular Biology
Md Azadul Haque, Mohd Y. Y. Rafii, Martini Mohammad Yusoff, Nusaibah Syd Ali, Oladosu Yusuff, Fatai Arolu, Mohammad Anisuzzaman
Summary: Natural and man-made ecosystems worldwide are susceptible to flooding, which causes environmental stress and leads to significant crop losses. Research on rice adaptation and tolerance to flooding/submergence has made considerable progress in the past two decades. Marker-assisted selection breeding approach using Sub1 QTL has been developed to improve flooding-tolerant rice varieties. However, gene pyramiding techniques need to be applied to develop flood-resilient rice varieties for different types of flooding stresses. This review provides an update on the molecular mechanisms, metabolic adaptations, and genetic factors governing rice flooding tolerance.
MOLECULAR BIOLOGY REPORTS
(2023)
Article
Horticulture
Mst. Farhana Nazneen Chowdhury, Mohd Y. Rafii, Siti Izera Ismail, Shairul Izan Ramlee, Monir Hosen, K. M. Rezaul Karim, Mohammad Ferdous Ikbal, Jamilu Halidu, Siti Sahmsiah Sahmat
Summary: Chili pepper cultivation is affected by biotic and abiotic stressors, such as high temperatures and anthracnose infestation. Chemical constituents have a relationship with tolerance and resistance. Through various assessments, superior chili hybrids were identified.
SCIENTIA HORTICULTURAE
(2023)
Article
Materials Science, Textiles
Md Al-Mamun, Mohd Y. Rafii, Azizah Binti Misran, Zulkarami Berahim, Zaiton Ahmad, Md Mahmudul Hasan Khan, Yusuff Oladosu, Fatai Arolu
Summary: This article summarizes recent advances in kenaf varietal improvement using marker-assisted breeding, genetic linkage maps, and morphological and molecular assessment of genetic diversity, and discusses current issues and future directions.
JOURNAL OF NATURAL FIBERS
(2023)
Article
Agronomy
Saba Jasim Aljumaili, Mohd Y. Rafii, Siti Zaharah Sakimin, Khairulmazmi Ahmad, Abdulmajeed Al-Jumaily
Summary: This study aimed to introduce marker-assisted backcross breeding (MABB)-mediated resistance genes against bacterial leaf blight (BLB) pathogens. Four Xoo resistance genes, xa21, xa13, xa5, and Xa4, were successfully introgressed into the high-yielding Malaysian MR297 lineage from the IRBB60 lineage using functional linked markers and SSR markers. The proportion of recurrent parent genome recovery (RPGR) at BC1F1, BC2F1, and BC2F2 was 81.94%, 92.30%, and 95.04%, respectively. Incorporating the four BLB resistance genes into the newly created lines would provide long-lasting and comprehensive protection against BLB. Therefore, MABB is a faster approach to introduce resistance genes compared to conventional breeding. All tested lines exhibited significant resistance to BLB, with three lines showing very high levels of resistance. It is recommended to use these new lines for commercially viable rice varieties.
Article
Agronomy
Chindy Ulima Zanetta, Mohd Y. Rafii, Juju Nakasha Jaafar, Thomas D. Warkentin, Budi Waluyo, Shairul Izan Ramlee
Summary: Understanding how pea accessions respond to high temperatures is important for breeding heat-tolerant pea varieties. This study examined 94 pea accessions grown in Malaysia and Indonesia and found that heat stress significantly reduced grain yield in Malaysia but not in Indonesia. Certain traits, such as the number of seeds per pod, were positively correlated with yield in both countries. Accessions B32, A19, G76, A11, and D44 were identified as potentially promising for high-temperature conditions.
NEW ZEALAND JOURNAL OF CROP AND HORTICULTURAL SCIENCE
(2023)
Article
Materials Science, Textiles
Md Al-Mamun, Mohd Y. Rafii, Azizah Binti Misran, Zulkarami Berahim, Zaiton Ahmad, Md Mahmudul Hasan Khan, Yusuff Oladosu
Summary: Understanding heterosis and combining ability is crucial for developing hybrid kenaf. A diallel scheme using Griffing diallel analysis technique was conducted on nine parental genotypes of kenaf, producing 36 F-1 combinations. The results showed significant variability for most traits, with predominance of additive gene for traits related to plant height, stem diameter, flowering time, number of pods, number of seeds and seed weight. High heritability was observed for seed number, while moderate heritability was observed for flowering time and seed weight. The hybrids H3, H4, H9, H11, H23, H29 and H35 showed high heterotic for fiber and seed yield.
JOURNAL OF NATURAL FIBERS
(2023)
Article
Agriculture, Multidisciplinary
Mst. Farhana Nazneen Chowdhury, Mohd Y. Rafii, Siti Izera Ismail, Shairul Izan Ramlee, Monir Hosen, K. M. Rezaul Karim, Oladosu Yusuff, Raihana Ridzuan
Summary: This study evaluated the genetic diversity of chili genotypes based on morpho-physiological parameters and found high heritability and variability, indicating the potential for selection and breeding to increase yield and production.
CHILEAN JOURNAL OF AGRICULTURAL RESEARCH
(2023)
Article
Chemistry, Multidisciplinary
Shih Hao Tony Peng, Kheng Hoy Chee, Halimi Mohd Saud, Mohd Rafii Yusop, Geok Hun Tan
Summary: This study characterized eight potential plant growth-promoting rhizobacteria (PGPR) strains isolated from oil palm estates in Malaysia based on biochemical tests and 16S rRNA sequencing. These strains demonstrated abilities in nitrogen fixation, phosphate and potassium solubilization, and indole-3-acetic acid (IAA) production. Molecular identification revealed the species of these strains, which can be further investigated for their effectiveness in bio-organic fertilizer production and application in the immature stage of oil palm growth.
APPLIED SCIENCES-BASEL
(2023)
Article
Food Science & Technology
Anna Arina Bt Ab. Halim, Mohd Y. Rafii, Mohamad B. Osman, Samuel C. Chukwu, Yusuff Oladosu
Summary: Heat treatment affects the structure and properties of rice varieties. This study examined the effects of heat treatment on the physicochemical properties and tissue structure of Mahsuri Mutan, Basmati 370, and MR219 rice varieties. The results showed that heat treatment significantly influenced the physicochemical traits and starch structure of the rice samples.
Article
Agriculture, Multidisciplinary
Tuan Muhammad Syafiq Tuan Hassan, Nusaibah Syd Ali, Mohd Rafii Yusop
Summary: Despite the economic contributions of the oil palm industry to Malaysia, it is facing severe threats from basal stem rot disease. A greenhouse study was conducted to evaluate the potential of biological control agents as treatments for this disease. The results showed that treatment with Trichoderma asperellum (UPM16) had the highest disease reduction, while Bacillus cereus (UPM15) showed the highest readings in all assays for Ganoderma-infected seedlings. The combination treatment with B. cereus and T. asperellum (BT) resulted in the detection of the most abundant metabolite, 4-2-aminoethyl-phenol.
PERTANIKA JOURNAL OF TROPICAL AGRICULTURAL SCIENCE
(2023)
Review
Horticulture
Siti Sahmsiah Sahmat, Mohd Y. Rafii, Yusuff Oladosu, Mashitah Jusoh, Mansor Hakiman, Hasmah Mohidin
Summary: The adoption of environmentally friendly technology and alternative substrates in sustainable agriculture has attracted the attention of researchers. Natural hydrogel-based absorbents have gained more interest due to their environmentally safe properties. These polymers can be easily obtained from agricultural wastes, have low cost, and can improve plant growth and the properties of planting mediums.
Article
Horticulture
Monir Hosen, Mohd Y. Rafii, Norida Mazlan, Mashitah Jusoh, Mst Farhana Nazneen Chowdhury, Oladosu Yusuff, Raihana Ridzuan, K. M. Rezaul Karim, Jamilu Halidu, Mohammad Ferdous Ikbal
Summary: A full diallel mating design was used to hybridize seven pumpkin inbred parental lines, resulting in 42 F-1 hybrids. The study found that heterosis breeding could be beneficial in improving yield, fruit quality and antioxidant traits in pumpkin. Several cross combinations were identified as having high specific combining ability and superior performance, suggesting their potential use as commercial hybrids.
