Article
Chemistry, Physical
Shusen Liao, Yunxuan Zhu, Qian Ye, Stephen Sanders, Jiawei Yang, Alessandro Alabastri, Douglas Natelson
Summary: Surface-enhanced Raman spectroscopy (SERS) relies on the local surface plasmon resonances (LSPRs) in metallic nanogaps. By exciting surface plasmon polaritons at nearby gratings and coupling to the local nanogap plasmon modes, SERS can be achieved in electromigrated gold molecular junctions with remote excitation. Compared to direct excitation, remote excitation shows more stable SERS spectra and similar open-circuit photovoltage (OCPV) when the photon count rates are comparable. Statistical analysis reveals a coupling efficiency of around 10% for remote excitation, consistent with simulated energy flow.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2023)
Article
Mechanics
Dongyuan Du, Chao Tang, Yujing Tang, Lu Yang, Jian Hao
Summary: This study used molecular dynamics simulation technology to investigate the impact of carbon nanowires on the thermodynamic properties of cellulose insulating paper. The results showed that different structures of carbon nanowires can improve the thermodynamic properties of cellulose, with hard chiral carbon nanowires having the most significant effect.
COMPOSITE STRUCTURES
(2021)
Article
Chemistry, Physical
Mikelis Marnauza, Robin Sjokvist, Sebastian Lehmann, Kimberly A. A. Dick
Summary: Environmental transmission electron microscopy is used to study the growth of Au nanoparticle seeded GaSb nanowires in situ. It is found that the precursor V/III ratio affects the morphology, composition, and diameter of the nanowires. The observed trends can be reproduced in a conventional exsitu system, highlighting the transferability and importance of the results obtained in situ.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2023)
Article
Chemistry, Inorganic & Nuclear
Dipanjan Samanta, Manisha Shaw, Md Abdus Salam Shaik, Rajarshi Basu, Imran Mondal, Angana Bhattacharya, Amita Pathak
Summary: Optical asymmetry and structural complexity were observed in flower-shaped CuO nanostructures and their toroid-like forms. The origin of chirality in these structures was attributed to the helical arrangement of the Cu-O-Cu network. The interaction between the toroid-shaped CuO nanostructures and enantiomeric tryptophan moieties was investigated.
INORGANIC CHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Wataru Yoshimune, Akira Kuwaki, Takumi Kusano, Takuro Matsunaga, Hiroshi Nakamura
Summary: Shape-controlled platinum nanoparticles with high oxygen reduction activity were synthesized using organic surfactants as a soft template in oleylamine. In situ experiments revealed the formation of anisotropic rod-shaped nanoparticles with different shapes appearing during the reaction process. The aspect ratio of the platinum nanoparticles was found to be correlated with the packing motifs of surfactant molecules, indicating the importance of interfacial structure in controlling nanoparticle shape and optimizing fuel cell performance.
Article
Biochemistry & Molecular Biology
ShaoLi Lyu, Wang Wang
Summary: The study systematically investigated the interactions between AST and HSA, revealing that AST could reduce the intrinsic fluorescence of HSA through static quenching and non-radiative energy transfer. The major binding forces involved in the process were hydrogen bond, van der Walls force, and hydrophobic interaction.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2021)
Article
Chemistry, Multidisciplinary
E. D. Leshchenko, J. Johansson
Summary: Heterostructured nanowires have unique properties and are commonly grown using the vapor-liquid-solid mechanism. The understanding and control of the interfacial abruptness at the heterointerface is crucial for further development. A model based on mass balance of atoms in the catalyst droplet is presented to explain the nucleation-limited regime for solid incorporation. The decrease of growth temperature and increase of flux of the forming element lead to improved interface abruptness. Comparisons of compositional profiles are made for InAs/GaAs and GaAs/AlAs heterostructures in different heterointerface directions.
Article
Biochemistry & Molecular Biology
V. Sachithanandam, P. Lalitha, A. Parthiban, Jayaraman Muthukumaran, Monika Jain, Ranjita Misra, T. Mageswaran, R. Sridhar, R. Purvaja, R. Ramesh
Summary: The study reveals the potential of Quinizarin isolated from mangrove plants in exhibiting antimicrobial, antioxidant, and cytotoxic activities against certain bacteria and cancer cells.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2022)
Article
Chemistry, Multidisciplinary
Noelle Gogneau, Pascal Chretien, Tanbir Sodhi, Laurent Couraud, Laetitia Leroy, Laurent Travers, Jean-Chistophe Harmand, Francois H. Julien, Maria Tchernycheva, Frederic Houze
Summary: The piezoelectric nanowires are considered promising nanomaterials for high-efficient piezoelectric generators, and understanding the relationship between their characteristics and piezoelectric conversion properties is crucial for device improvement. Using an advanced nano-characterization tool derived from AFM, researchers quantified the piezo-conversion properties of NWs compressed with controlled force, revealing a high electromechanical coupling coefficient of up to 43.4% for GaN NWs. The coefficient is influenced by the Schottky nano-contact formation and surface charge effects, particularly in sub-100 nm wide GaN NWs, providing a new foundation for enhancing NW-based nanogenerator devices.
Article
Biochemistry & Molecular Biology
Francesco Tavanti, Alfonso Pedone, Maria Cristina Menziani
Summary: This study demonstrated through simulations how gold nanoparticles adsorb amyloid-beta monomers, reducing their tendency to form mature amyloid fibrils.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Abhishek Kumar Verma, Grijesh Jaiswal, Kazi Nasrin Sultana, Sandeep Kumar Srivastava
Summary: The two component signaling system ArlRS regulates adhesion, biofilm formation, and virulence in methicillin resistant Staphylococcus aureus. It consists of a histidine kinase ArlS and response regulator ArlR. The dimerization of ArlR receiver domain upon signal recognition activates DNA binding and subsequent virulence expression.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2023)
Review
Chemistry, Physical
Mohd Sofi Numin, Almila Hassan, Khairulazhar Jumbri, Kee Kok Eng, Noorazlenawati Borhan, Nik M. Radi Nik M. Daud, Azmi M. Nor A, Firdaus Suhor, Roswanira Abdul Wahab
Summary: In recent years, molecular modeling has played a vital role in developing organic corrosion inhibitors. By studying the electronic properties and behavior of these inhibitors on metal surfaces, a deeper understanding of their corrosion inhibition mechanism can be achieved. This review summarizes the findings of recent molecular dynamics simulations and density functional theory calculations on Gemini surfactant corrosion inhibitors, highlighting the importance of computer simulation in predicting their role. The review also presents the principles of MD simulation and DFT calculation in corrosion systems, as well as the methods used to explain the efficiency and suitability of Gemini surfactants as corrosion inhibitors.
JOURNAL OF MOLECULAR LIQUIDS
(2022)
Article
Chemistry, Multidisciplinary
Hongquan Lu, Bin Dong, Junqian Zhang, Chaofeng Lu, Haifei Zhan
Summary: This study investigated the deformation behavior of copper nanowire under coupled tension-torsion loading using atomistic simulations. The results showed that the yielding pattern and dislocation pattern of the nanowire varied with different torsion/tension strain ratios. Additionally, the deformation behavior of the nanowire differed under tension-dominated loading and torsion-dominated loading. These findings have important implications for engineering applications.
Article
Environmental Sciences
Mengxi Cao, Jinbo Wei, Yu Pan, Ling Wang, Zhunjie Li, Yeli Hu, Yong Liang, Huiming Cao
Summary: Bisphenol A (BPA) and its analogues can disrupt the endocrine system and reproductive function. Recent studies have shown that some BPA analogues have strong anti-estrogenic effects, but conflicting results were observed in different in vitro assays, and it is still unclear whether these BPA analogues have in vivo effects at environmentally relevant concentrations.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Article
Chemistry, Physical
Yu Zhu, Abash Sharma, Eric J. Spangler, Mohamed Laradji
Summary: The adhesion modes of spherical Janus nanoparticles on planar membranes were investigated through molecular dynamics simulations. It was found that the nanoparticles exhibited rich phase behavior depending on their adhesion energy density and areal number density. At intermediate densities and intermediate to high adhesion energy density, repulsive membrane-curvature-mediated interactions caused the nanoparticles to self-assemble into an ordered hexagonal superlattice.
Article
Chemistry, Multidisciplinary
Alexander Brady, Kun Liang, Van Quan Vuong, Robert Sacci, Kaitlyn Prenger, Matt Thompson, Ray Matsumoto, Peter Cummings, Stephan Irle, Hsiu-Wen Wang, Michael Naguib
Summary: Through the study of sodium preintercalated MXene, we identified the formation of a two-dimensional sodium domain structure at interfaces/surfaces and found that the location of sodium ions determines the layer charges and redox process. Electrochemical testing of pre-sodiated MXene as an electrode material in a sodium-ion capacitor showed excellent reversibility and performance, demonstrating the feasibility of chemical preintercalation as an approach to prepare MXene electrodes.
Article
Chemistry, Physical
Co D. Quach, Justin B. Gilmer, Daniel Pert, Akanke Mason-Hogans, Christopher R. Iacovella, Peter T. Cummings, Clare McCabe
Summary: In this study, a combinatorial screening using molecular simulation design framework and machine learning techniques was performed to explore the influence of different chemistry characteristics on the tribological properties of monolayer films. The results showed that films with small terminal groups exhibited the most promising performance.
JOURNAL OF CHEMICAL PHYSICS
(2022)
Article
Chemistry, Physical
Murillo L. Martins, Robert L. Sacci, Xiaobo Lin, Ray Matsumoto, Ivan Popov, Jinlei Cui, Takeshi Kobayashi, Madhusudan Tyagi, Wei Guo, Sheng Dai, Marek Pruski, Peter T. Cummings, Alexei P. Sokolov, Eugene Mamontov
Summary: Concentrated solutions of Li salts in acetonitrile can be used as alternative electrolytes for the next generation of Li batteries. However, the reduced mobility of the chemical species is a barrier. This study explores the use of acetone as a cosolvent to improve the electrolyte properties by shifting the solvation sheaths of the ions and forming mobile high-concentration clusters.
JOURNAL OF PHYSICAL CHEMISTRY C
(2022)
Article
Chemistry, Physical
T. Hvozd, Yu Kalyuzhnyi, V. Vlachy, P. T. Cummings
Summary: Research shows that irregular colloids with three and four equivalent patches, confined in a random porous medium, undergo re-entrant gas-liquid phase separation at low temperatures, with liquid phase density approaching zero. This phenomenon provides new insights into the phase behavior of biological macromolecules in crowded environments.
JOURNAL OF CHEMICAL PHYSICS
(2022)
Article
Chemistry, Physical
Naresh C. Osti, Bishnu Prasad Thapaliya, Ray A. Matsumoto, Arjun Bansal, Xiaobo Lin, Peter T. Cummings, Madhusudan Tyagi, Sheng Dai, Eugene Mamontov
Summary: This study reveals that LiTFSI has a significant impact on the diffusivity of organic solvents in supercapacitors, with a reduction of approximately 50% in solvent diffusivity when the concentration is below 1 M. These findings provide important guidance for formulating electrolytes to enhance the performance of energy storage devices.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2022)
Article
Chemistry, Multidisciplinary
Zhichao Chen, Zixuan Li, Wei Zhao, Ray A. Matsumoto, Matthew W. Thompson, Oscar Morales-Collazo, Peter T. Cummings, Filippo Mangolini, Joan F. Brennecke
Summary: This study investigates the layered structures of four ionic liquids (ILs) on liquid-solid interfaces and reveals the orientation and arrangement of ions on the surface are influenced by interfacial ordering.
Article
Chemistry, Multidisciplinary
Rong-Guang Xu, Gunan Zhang, Yuan Xiang, Jonathan Garcia, Yongsheng Leng
Summary: The article reveals the friction behavior of metal tips sliding on metal surfaces through molecular dynamics simulations, showing how the geometry of polycrystalline Pt tips affects friction behavior and emphasizing the importance of a single crystalline protrusion tip to achieve clear stick-slip friction signals.
Article
Energy & Fuels
Simon Fleischmann, Yuan Zhang, Xuepeng Wang, Peter T. Cummings, Jianzhong Wu, Patrice Simon, Yury Gogotsi, Volker Presser, Veronica Augustyn
Summary: This article proposes that electrochemical charge storage in a confined space can transition between electrostatic adsorption and Faradaic intercalation depending on the extent of ion solvation and ion-host interaction. The understanding of electrosorption in porous and layered materials requires a nuanced view of the capacitive mechanism due to electrolyte confinement. The continuum between double-layer capacitance and Faradaic intercalation is dependent on the specific confinement microenvironment.
Article
Chemistry, Physical
Jinlei Cui, Xiaobo Lin, Wei Zhao, Peter T. Cummings, Marek Pruski, Takeshi Kobayashi
Summary: In this study, the diffusivity of anions of an RTIL dissolved in different organic solvents in the micropores of activated carbon was investigated using 2D EXSY NMR and MD simulations. The results suggest that the interactions of solvents with activated carbon play a critical role in the power density and energy density of EDLCs.
JOURNAL OF PHYSICAL CHEMISTRY B
(2022)
Article
Chemistry, Physical
Ivan Popov, Airat Khamzin, Ray A. Matsumoto, Wei Zhao, Xiaobo Lin, Peter T. Cummings, Alexei P. Sokolov
Summary: The study analyzed the ion dynamics of two salts in highly concentrated solutions, finding that the light ion transport number can be increased by changing the solvent concentration in solvent-in-salt systems.
JOURNAL OF PHYSICAL CHEMISTRY B
(2022)
Article
Chemistry, Multidisciplinary
Tae Yun Ko, Daesin Kim, Seon Joon Kim, Hyerim Kim, Arun S. Nissimagoudar, Seung-Cheol Lee, Xiaobo Lin, Peter T. Cummings, Sehyun Doo, Seongmin Park, Tufail Hassan, Taegon Oh, Ari Chae, Jihoon Lee, Yury Gogotsi, Insik In, Chong Min Koo
Summary: The article introduces a novel ligand chemistry for MXenes using alkylated 3,4-dihydroxy-L-phenylalanine (ADOPA), which can functionalize MXene surfaces under mild reaction conditions. The ADOPA ligands form strong hydrogen-bonding and pi-electron interactions with the surface terminal groups of MXenes, while the hydrophobic fluorinated alkyl tail is compatible with organic solvents. This method produces stable colloidal solutions and liquid crystals of various MXenes in organic solvents, with excellent electrical conductivity, improved oxidation stability, and processability, enabling applications in flexible electrodes and electromagnetic interference shielding.
Article
Chemistry, Physical
Y. V. Kalyuzhnyi, A. Jamnik, P. T. Cummings
Summary: An analytic theory is developed for the structure and thermodynamics of the Speedy-Debenedetti-Baxter valence limited model of colloidal fluids. The theory is based on the solution of the multidensity version of the Ornstein-Zernike equation supplemented by a Percus-Yevick-like closure relation for central-force type systems. Analytic expressions for correlation functions, structure factor, and excess internal energy are derived. The accuracy of the theory is assessed through comparison with computer simulation results, showing good agreement for structural properties.
JOURNAL OF MOLECULAR LIQUIDS
(2023)
Article
Materials Science, Multidisciplinary
Naresh C. Osti, Xiaobo Lin, Wei Zhao, Xuehang Wang, Chaofan Chen, Yu Gao, Takeshi Torita, Alexander Kolesnikov, Peter T. Cummings, Yury Gogotsi, Eugene Mamontov
Summary: In this study, the impact of 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide, [EmimTFSI], ionic liquid and acetonitrile (ACN) concentrations on the electrochemical performance and ion dynamics of Ti3C2T (x) MXene supercapacitor was investigated. The results indicate that an optimal ACN concentration allows for more cations to attach to the MXene electrode surface, resulting in improved electrochemical performance. This increased capacitance is also associated with enhanced microscopic dynamics of the cation away from the pore wall. These findings provide guidance for optimizing the performance of MXene-based supercapacitors using organic solvents-ionic liquid-based electrolyte systems.
Article
Chemistry, Medicinal
Brad Crawford, Umesh Timalsina, Co D. Quach, Nicholas C. Craven, Justin B. Gilmer, Clare McCabe, Peter T. Cummings, Jeffrey J. Potoff
Summary: MoSDeF-GOMC is a Python interface for the Monte Carlo software GOMC, providing automation for generating initial coordinates, assigning force field parameters, and writing coordinate, connectivity, force field parameter, and simulation control files. It simplifies the simulation process for novice users and enables advanced users to create complex workflows. The software ensures reproducibility by encoding all relevant simulation parameters within the workflow.
JOURNAL OF CHEMICAL INFORMATION AND MODELING
(2023)
Article
Chemistry, Multidisciplinary
Rong-Guang Xu, Gunan Zhang, Yuan Xiang, Yongsheng Leng
Summary: The friction behaviors of an amorphous SiO2 tip sliding on the Au(111) surface in atomic force microscopy (AFM) were investigated using molecular dynamics (MD) simulations. It was observed that there is an extremely low, close-to-zero friction regime with clear stick-slip friction signals at low normal loads. Friction is almost independent of the applied normal load below a certain threshold, but it can either remain low or increase sharply above this threshold. This unexpected friction duality is attributed to the formation of defects at the sliding interface.