4.6 Article

Identifying Zeolite Frameworks with a Machine Learning Approach

期刊

JOURNAL OF PHYSICAL CHEMISTRY C
卷 113, 期 52, 页码 21721-21725

出版社

AMER CHEMICAL SOC
DOI: 10.1021/jp907017u

关键词

-

资金

  1. National Science Foundation [CHE-0626111]
  2. National Institute of Standards and Technology
  3. TERAGRID [PHY050026T]

向作者/读者索取更多资源

Zeolites are microporous Crystalline materials with highly regular framework structures consisting of molecular-sized pores and channels. The characteristic framework type of a zeolite is conventionally defined by combining information on its coordination sequences, vertex symbols, tiling, and transitivity information. Here we present a novel knowledge-based approach for zeolite framework type classification. We show the predicting abilities of a machine learning model that uses a nine-dimensional feature vector including novel topological descriptors obtained by computational geometry techniques, together with selected physical and chemical properties of zeolite crystals. Trained oil the crystallographic structures of known zeolites, this model predicts the framework types of zeolite crystals with very high accuracy.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Chemistry, Physical

Polypyrrole on graphene: A density functional theory study

Sibel Ozkaya, Estela Blaisten-Barojas

SURFACE SCIENCE (2018)

Article Multidisciplinary Sciences

Simulating the NaK Eutectic Alloy with Monte Carlo and Machine Learning

Douglas M. Reitz, Estela Blaisten-Barojas

SCIENTIFIC REPORTS (2019)

Article Biochemistry & Molecular Biology

Modeling the Tertiary Structure of the Rift Valley Fever Virus L Protein

Gideon K. Gogovi, Fahad Almsned, Nicole Bracci, Kylene Kehn-Hall, Amarda Shehu, Estela Blaisten-Barojas

MOLECULES (2019)

Article Chemistry, Physical

Exploring with Molecular Dynamics the Structural Fate of PLGA Oligomers in Various Solvents

James Andrews, Estela Blaisten-Barojas

JOURNAL OF PHYSICAL CHEMISTRY B (2019)

Article Nanoscience & Nanotechnology

Polyacrylamide in glycerol solutions from an atomistic perspective of the energetics, structure, and dynamics

Scott D. Hopkins, Gideon K. Gogovi, Eric Weisel, Robert A. Handler, Estela Blaisten-Barojas

AIP ADVANCES (2020)

Article Polymer Science

Structure, energetics and thermodynamics of PLGA condensed phases from Molecular Dynamics

James Andrews, Robert A. Handler, Estela Blaisten-Barojas

POLYMER (2020)

Article Chemistry, Medicinal

Predictive Models to Identify Small Molecule Activators and Inhibitors of Opioid Receptors

Srilatha Sakamuru, Jinghua Zhao, Menghang Xia, Huixiao Hong, Anton Simeonov, Iosif Vaisman, Ruili Huang

Summary: Novel computational models were developed to predict the activity of opioid receptors based on chemical structures, successfully identifying new active compounds. Experimental validation showed that the best performing model, using the random forest classifier, achieved hit rates ranging from 2.3% to 15.8%, enriching hit rates by >= 2-fold compared to the original assay.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2021)

Article Chemistry, Physical

Distinctive Formation of PEG-Lipid Nanopatches onto Solid Polymer Surfaces Interfacing Solvents from Atomistic Simulation

James Andrews, Estela Blaisten-Barojas

Summary: This study uses atomistic simulations to investigate the interface interactions between solid PLGA and water, ethyl acetate, and a mixture of both, as well as exploring the formation of macromolecular assemblies at the PLGA-solvent interface with the addition of DSPE-PEG. The adhesion of nanopatches to the surface is driven by dispersive forces, while keeping the solvent around the new formations is dominated by electrostatic forces. The predicted mechanism of PEG-lipid nanopatch formation could be generally applicable for tailoring asymmetric PLGA nanoparticles for specific drug delivery conditions.

JOURNAL OF PHYSICAL CHEMISTRY B (2022)

Article Chemistry, Physical

Solutions and Condensed Phases of PEG2000 from All-Atom Molecular Dynamics

Daniel Sponseller, Estela Blaisten-Barojas

Summary: Extensive all-atom molecular dynamics studies were conducted on polyethylene glycol (PEG(2000)) in solvated and polymer bulk condensed phases, revealing structural changes under different conditions, with predicted properties aligning well with experiments, laying a foundation for the preparation of novel composite materials in the future.

JOURNAL OF PHYSICAL CHEMISTRY B (2021)

Article Physics, Condensed Matter

Modeling oxidised polypyrrole in the condensed phase with a novel force field

Yoseph Abere, Greg Helmick, Estela Blaisten-Barojas

Summary: A novel model potential is developed for simulating oxidised oligopyrroles in condensed phases. The optimized force field parameters show excellent agreement with experimental results.

JOURNAL OF PHYSICS-CONDENSED MATTER (2022)

Article Biochemistry & Molecular Biology

A New Structural Model of Apolipoprotein B100 Based on Computational Modeling and Cross Linking

Kianoush Jeiran, Scott M. Gordon, Denis O. Sviridov, Angel M. Aponte, Amanda Haymond, Grzegorz Piszczek, Diego Lucero, Edward B. Neufeld, Iosif I. Vaisman, Lance Liotta, Ancha Baranova, Alan T. Remaley

Summary: This study developed a novel method to divide apoB-100 into subunits and domains, and validated the models using mass spectrometry cross-linking and known disulfide bond positions. The continuous structure of apoB-100 was generated, and the dynamics during particle size transitions were examined. Additionally, the proposed model of receptor ligand binding provides new insights into the functions of apoB-100.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Chemistry, Multidisciplinary

Forecasting molecular dynamics energetics of polymers in solution from supervised machine learning

James Andrews, Olga Gkountouna, Estela Blaisten-Barojas

Summary: This paper explores the ability of three recurrent neural network architectures to predict the energetics of a liquid solution. The results show that these architectures can accurately reproduce the time series, but are limited in their ability to forecast energy in the short or long term. The authors propose a computational protocol that improves energy forecasting accuracy by utilizing time patterns. Although the distribution of points in the energy forecast band is not optimal, the proposed protocol provides useful estimates.

CHEMICAL SCIENCE (2022)

Article Multidisciplinary Sciences

Fitness of unregulated human Ras mutants modeled by implementing computational mutagenesis and machine learning techniques

Majid Masso, Arnav Bansal, Preethi Prem, Akhil Gajjala, Iosif I. Vaisman

HELIYON (2019)

Article Computer Science, Interdisciplinary Applications

Vortex generation in a finitely extensible nonlinear elastic Peterlin fluid initially at rest

Robert A. Handler, Estela Blaisten-Barojas, Phillip M. Ligrani, Pei Dong, Mikell Paige

ENGINEERING REPORTS (2020)

暂无数据