4.5 Article

JENUFA GEN. NOV.: A NEW GENUS OF COCCOID GREEN ALGAE (CHLOROPHYCEAE, INCERTAE SEDIS) PREVIOUSLY RECORDED BY ENVIRONMENTAL SEQUENCING

期刊

JOURNAL OF PHYCOLOGY
卷 47, 期 4, 页码 928-938

出版社

WILEY
DOI: 10.1111/j.1529-8817.2011.01009.x

关键词

18S rRNA; Chlorophyceae; Chlorophyta; Jenufa; phylogeny; taxonomy; ultrastructure

资金

  1. Czech Science Foundation [P506/10/0705]
  2. Czech Ministry of Education [21620828]

向作者/读者索取更多资源

The diversity of eukaryotic microorganisms is far from fully described, as indicated by the vast number of unassigned genotypes retrieved by environmental sequencing or metagenomics. We isolated several strains of unicellular green algae from algal biofilms growing on tree bark in a Southeast Asian tropical rainforest and determined them to be relatives of an unidentified lineage of environmental 18S rDNA sequences, thus uncovering its cellular identity. Light, confocal, and electron microscope observations and sequencing the 18S rRNA gene revealed that the strains represent two different species within an apparently new genus, described here as Jenufa gen. nov. Both species formed minute coccoid cells with an irregular globular outline, a smooth cell wall, and a single parietal chloroplast without a pyrenoid. The two species, described herein as J. perforata and J. minuta, differed in chloroplast morphology and cell wall structure. Phylogenetic analyses of 18S rRNA gene sequences showed a firm relationship between the two species and placed the Jenufa lineage in an unresolved position within the CS clade (Chlamydomonadales + Sphaeropleales) of the class Chlorophyceae, although possible affinities to the genus Golenkinia were suggested both by maximum-likelihood (ML) and Bayesian methods. Furthermore, two almost identical environmental 18S rDNA sequences from an endolithic microbial community occurring in dolomite rock in the central Alps turned out to be specifically related to, yet apparently distinct from, the sequence of J. minuta, indicating the existence of an undescribed Jenufa species occurring in the temperate zone.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.5
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Plant Sciences

The new species of Mallomonas (Stramenopiles, Chrysophyceae, Synurales): Mallomonas decora sp. nov.

Yvonne Nemcova, Jana Faturova, Jana Kreidlova

Summary: In this paper, a new species Mallomonas decora is described based on silica-scale morphology. The species belongs to the Torquatae section and exhibits distinct characteristics that differentiate it from Mallomonas dickii and Mallomonas ocalensis.

NOVA HEDWIGIA (2022)

Article Microbiology

When you Like Other Algae: Adglutina synurophila gen. et sp. nov. (Moewusinia, Chlorophyceae), a Clingy Green Microalga Associated with Synura Colonies

Dovile Barcyte, Martin Pusztai, Pavel Skaloud, Marek Elias

Summary: In this study, a new alga, Adglutina synurophila gen. et sp. nov., was described based on morphological and molecular phylogenetic analyses. It was isolated from colonies of the golden-brown alga Synura petersenii and belongs to the phylogroup Moewusinia. Adglutina is characterized by its unique morphology and its relationship with acidophilic Chlamydomonas species.

PROTIST (2022)

Article Biology

A new lineage of non-photosynthetic green algae with extreme organellar genomes

Tomas Panek, Dovile Barcyte, Sebastian C. Treitli, Kristina Zahonova, Martin Sokol, Tereza Sevcikova, Eliska Zadrobilkova, Karin Jaske, Naoji Yubuki, Ivan Cepicka, Marek Elias

Summary: By studying the newly discovered non-photosynthetic lineage Leontynka, new insights into organellar genome evolution in Chlamydomonadales can be gained. Leontynka’s unique characteristics of plastid and mitochondrial genomes make it an interesting model for studying organellar genome evolution.

BMC BIOLOGY (2022)

Article Cell Biology

Phylogenetic profiling and cellular analyses of ARL16 reveal roles in traffic of IFT140 and INPP5E

Skylar Dewees, Romana Vargova, Katherine R. Hardin, Rachel E. Turn, Saroja Devi, Joshua Linnert, Uwe Wolfrum, Tamara Caspary, Marek Elias, Richard A. Kahn

Summary: The ancient ARF family of regulatory GTPases includes ARL16, which may regulate the trafficking pathway from the Golgi to cilia.

MOLECULAR BIOLOGY OF THE CELL (2022)

Article Microbiology

Evidence for an Independent Hydrogenosome-to-Mitosome Transition in the CL3 Lineage of Fornicates

Romana Vargova, Pavla Hanouskova, Jana Salamonova, David Zihala, Jeffrey D. Silberman, Marek Elias, Ivan Cepicka

Summary: In this study, detailed microscopic and transcriptome analyses were conducted on a poorly documented strain of an anaerobic free-living marine flagellate, PCS, in the CL3 fornicate lineage. The researchers discovered a new member of the Caviomonadidae family, Euthynema mutabile, which possesses an ultrastructurally discernible MRO. Transcriptome analyses also showed unique amino acid substitutions in I. spirale's eRF1 protein domain responsible for termination codon recognition. The study suggests that the CL3 clade has undergone a hydrogenosome-to-mitosome transition independent from that previously documented in the lineage leading to Giardia.

FRONTIERS IN MICROBIOLOGY (2022)

Article Microbiology

High genomic differentiation and limited gene flow indicate recent cryptic speciation within the genus Laspinema (cyanobacteria)

Aleksandar Stanojkovic, Svatopluk Skoupy, Pavel Skaloud, Petr Dvorak

Summary: The sympatric occurrence of closely related lineages displaying conserved morphological and ecological traits is characteristic of free-living microbes. Gene flow, recombination, selection, and mutations govern the genetic variability between these cryptic lineages and drive their differentiation. However, insufficient population-level sampling has hindered the study of intra-species genetic diversity and speciation in cyanobacteria. In this study, using phylogenomics and a population genomic approach, the authors investigated the extent of local genomic diversity and the mechanisms underlying sympatric speciation in Laspinema thermale. They found two cryptic lineages of Laspinema with high genetic diversity. Recombination occurred more frequently within the lineages, suggesting a barrier to gene flow that maintains divergence. Genomic regions associated with possible adaptations to different environmental conditions were found, indicating the influence of both genomic and ecological processes on Laspinema species diversification.

FRONTIERS IN MICROBIOLOGY (2022)

Article Marine & Freshwater Biology

Invasive Vaucheria aff. compacta (Xanthophyceae) and its distribution over a high Arctic tidal flat in Svalbard

Josef Elster, Claude-Eric Souquieres, Iva Jadrna, Pavel Skaloud, Janne E. Soreide, Jana Kviderova

Summary: The high Arctic Svalbard tidal flat ecosystem is being affected by global warming, leading to the potential invasion of additional species and changes in the environment. Increased human travel to Svalbard increases the possibility of species transportation. Anthropogenic activities related to global warming have facilitated the movement of organisms across previously isolated regions, contributing to biotic homogenization and extinctions. The study focused on the invasive alga Vaucheria aff. compacta in Adventfjorden tidal flat, providing information on its occurrence, ecological state, and future development. Using a drone mapping survey, the estimated area cover of V. aff. compacta was approximately 231.1 m2 across a tidal flat area of 2475 m2. The invasive V. aff. compacta is a cosmopolitan species widely distributed on coastal shores globally. It plays an important role in the Adventforden sea-land ecotone, stabilizing sediment, protecting the seashore ecosystem, and facilitating the greening of the Arctic due to global warming.

ESTUARINE COASTAL AND SHELF SCIENCE (2023)

Article Plant Sciences

The curious case of Cladonia luteoalba: no support for its distinction

Ivana Cernajova, Jana Steinova, Zuzana Skvorova, Pavel Skaloud

Summary: Cladonia luteoalba's chemotype coincides with that of the associated Cladonia thalli, but our data did not support its distinction as a separate species. Therefore, the true nature of C. luteoalba remains unclear.

LICHENOLOGIST (2022)

Article Biochemistry & Molecular Biology

Redefining Chlorobotryaceae as one of the principal and most diverse lineages of eustigmatophyte algae

Dovile Barcyte, Martina Zatopkova, Yvonne Nemcova, Michal Richtar, Tatiana Yurchenko, Karin Jaske, Karen P. Fawley, Pavel Skaloud, Tereza Seveikova, Marvin W. Fawley, Marek Elias

Summary: This study investigates the diversity, phylogeny, and classification of the Eustigmataceae group within the Eustigmatophyceae. Through comprehensive analyses of hundreds of DNA sequences and plastid genomes, the researchers reveal the phylogenetic relationships within the Eustigmataceae group and confirm the presence of Chlorobotrys as a member of this group. Additionally, the study redefines the taxonomic name of this group and provides insights into the morphology and flagellar protein genes of Chlorobotryaceae members. Overall, this research provides a comprehensive understanding of one of the most diverse lineages of eustigmatophyte algae.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2022)

Letter Plant Sciences

(192) Insert a new Chapter E in Division II on a Code of Ethics

Veronica Malavasi, Pavel Skaloud

Article Biodiversity Conservation

Ecological monitoring of disturbed mountain peatlands: an analysis based on desmids

Jiri Neustupa, Jan Stastny, Katerina Woodard

Summary: This study focused on the community structure of desmids, one of the most frequent groups of peatland phytobenthos in the Bohemian Massif. It found that several ecologically sensitive taxa were recorded in the fragments of ombrogenous bogs, which currently cover less than 3% of the area. The highest species richness was recorded in several slightly acidic ponds and sinkholes, which were often located outside the existing protected areas.

BIODIVERSITY AND CONSERVATION (2023)

Article Biochemistry & Molecular Biology

A single cryptomonad cell harbors a complex community of organelles, bacteria, a and selfish elements

Emma E. George, Dovile Barcyte, Gordon Lax, Sam Livingston, Daria Tashyreva, Filip Husnik, Julius Lukes, Marek Elias, Patrick J. Keeling

Summary: Symbiosis between prokaryotes and microbial eukaryotes has had a significant impact on evolution and ecology. A highly complex community of endosymbionts and a bacteriophage were found within a single Cryptomonad cell. These findings provide insights into organelle evolution and the dynamics of endosymbiotic relationships.

CURRENT BIOLOGY (2023)

Article Biochemistry & Molecular Biology

A Novel Group of Dynamin-Related Proteins Shared by Eukaryotes and Giant Viruses Is Able to Remodel Mitochondria From Within the Matrix

Shaghayegh Sheikh, Tomas Panek, Ondrej Gahura, Jiri Tyc, Kristina Zahonova, Julius Lukes, Marek Elias, Hassan Hashimi

Summary: The study identifies a novel GTPase called MidX that is present in eukaryotes and giant viruses, and it is predicted to affect mitochondrial morphology by interacting with the inner membrane. MidX has a unique structure and mode of action compared to other proteins with similar functions.

MOLECULAR BIOLOGY AND EVOLUTION (2023)

Article Biology

Geometric Morphometric Versus Genomic Patterns in a Large Polyploid Plant Species Complex

Ladislav Hodac, Kevin Karbstein, Salvatore Tomasello, Jana Waeldchen, John Paul Bradican, Elvira Hoerandl

Summary: This study evaluated phenotypic variation in the Eurasian Ranunculus auricomus complex using geometric morphometric, genomic, and ecological data. The results showed that genomic clusters largely corresponded to morphological groupings, but most described asexual hybrid taxa could not be distinguished from each other. Phenotypic variation was influenced more by genomic composition than by climatic conditions, and the phenotypic variation of asexual hybrids exhibited a mosaic pattern of intermediate and transgressive phenotypes. Therefore, this study supports a taxonomic revision of the complex.

BIOLOGY-BASEL (2023)

Article Plant Sciences

Hydrocytium expands the phylogenetic, morphological, and genomic diversity of the poorly known green algal order Chaetopeltidales

Dovile Barcyte, Marek Elias

Summary: This study discovered a new genus in the order Chaetopeltidales, expanding our understanding of its diversity and providing insight into its virosphere.

AMERICAN JOURNAL OF BOTANY (2023)

暂无数据