Adaptive mutation related to cellulose producibility in Komagataeibacter medellinensis (Gluconacetobacter xylinus) NBRC 3288

Replacement of a terminal cytochrome c oxidase by ubiquinol oxidase during the evolution of acetic acid bacteria

(2014) Minenosuke Matsutani et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Acetic Acid Bacteria Genomes Reveal Functional Traits for Adaptation to Life in Insect Guts

(2014) Bessem Chouaia et al.   Genome Biology and Evolution

Transfer of Gluconacetobacter kakiaceti, Gluconacetobacter medellinensis and Gluconacetobacter maltaceti to the genus Komagataeibacter as Komagataeibacter kakiaceti comb. nov., Komagataeibacter medellinensis comb. nov. and Komagataeibacter maltaceti comb. nov.

(2014) Y. Yamada   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete genome sequence of Gluconacetobacter xylinus E25 strain—Valuable and effective producer of bacterial nanocellulose

(2014) Katarzyna Kubiak et al.   JOURNAL OF BIOTECHNOLOGY

Identification and Characterization of Non-Cellulose-Producing Mutants of Gluconacetobacter hansenii Generated by Tn5 Transposon Mutagenesis

(2013) Y. Deng et al.   JOURNAL OF BACTERIOLOGY

Adaptive mutation of Acetobacter pasteurianus SKU1108 enhances acetic acid fermentation ability at high temperature

(2013) Minenosuke Matsutani et al.   JOURNAL OF BIOTECHNOLOGY

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

Heterologous Overexpression and Characterization of a Flavoprotein-CytochromecComplex Fructose Dehydrogenase of Gluconobacter japonicus NBRC3260

(2012) Shota Kawai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae

(2012) Haruo Suzuki et al.   BMC GENOMICS

Gluconacetobacter medellinensis sp. nov., cellulose- and non-cellulose-producing acetic acid bacteria isolated from vinegar

(2012) C. Castro et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Description of Komagataeibacter gen. nov., with proposals of new combinations (Acetobacteraceae)

(2012) Yuzo Yamada et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Ultrafine Cellulose Fibers Produced byAsaia bogorensis, an Acetic Acid Bacterium

(2011) Akio Kumagai et al.   BIOMACROMOLECULES

Genome Sequence of Gluconacetobacter sp. Strain SXCC-1, Isolated from Chinese Vinegar Fermentation Starter

(2011) X.-j. Du et al.   JOURNAL OF BACTERIOLOGY

Whole-Genome Sequencing of Staphylococcus aureus Strain RN4220, a Key Laboratory Strain Used in Virulence Research, Identifies Mutations That Affect Not Only Virulence Factors but Also the Fitness of the Strain

(2011) D. Nair et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of NBRC 3288, a Unique Cellulose-Nonproducing Strain of Gluconacetobacter xylinus Isolated from Vinegar

(2011) H. Ogino et al.   JOURNAL OF BACTERIOLOGY

Genome Sequences of the High-Acetic Acid-Resistant Bacteria Gluconacetobacter europaeus LMG 18890T and G. europaeus LMG 18494 (Reference Strains), G. europaeus 5P3, and Gluconacetobacter oboediens 174Bp2 (Isolated from Vinegar)

(2011) C. Andres-Barrao et al.   JOURNAL OF BACTERIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome Sequence of a Cellulose-Producing Bacterium, Gluconacetobacter hansenii ATCC 23769

(2010) P. R. Iyer et al.   JOURNAL OF BACTERIOLOGY

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Structure of bacterial cellulose synthase subunit D octamer with four inner passageways

(2010) S.-Q. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5

(2009) Marcelo Bertalan et al.   BMC GENOMICS

Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus

(2009) Yoshinao Azuma et al.   NUCLEIC ACIDS RESEARCH