4.7 Article

Direct Peptide Cyclization and One-Pot Modification Using the MeDbz Linker

期刊

JOURNAL OF ORGANIC CHEMISTRY
卷 83, 期 17, 页码 10525-10534

出版社

AMER CHEMICAL SOC
DOI: 10.1021/acs.joc.8b01237

关键词

-

资金

  1. Carlsberg Foundation [2013-01-0333, CF15-011]
  2. University of Copenhagen

向作者/读者索取更多资源

The one-pot synthesis and modification of cyclic peptides through a self-cleaving on-resin protocol is described. We apply Dawson's MeDbz linker to achieve direct intramolecular peptide cyclization by thioesterification followed by S -> N acyl shift. This native chemical ligation approach requires no activating additive and allows direct modification of the crude cyclic peptides in one-pot. The strategy was applied to synthesize 5 cyclic peptide natural products of varying ring size. Finally, one-pot modifications include desulfurization, fluorophore conjugation, and intramolecular disulfide formation.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Plant Sciences

Zn2+-Dependent Histone Deacetylases in Plants: Structure and Evolution

Inmaculada Yruela, Carlos Moreno-Yruela, Christian A. Olsen

Summary: This review provides a comprehensive revision of plant histone deacetylase (HDA) phylogeny and translates recent lessons from other organisms. The evolution of HDAs is correlated with a gain of structural ductility/disorder, similar to other proteins. The authors highlight Brassicaceae-specific HDAs and key mutations affecting the catalytic activity of individual HDAs.

TRENDS IN PLANT SCIENCE (2021)

Editorial Material Biochemistry & Molecular Biology

The Chemical Biology-Medicinal Chemistry Continuum: EFMC's Vision

Maria Duca, Dennis Gillingham, Christian Adam Olsen, Gianluca Sbardella, Philip R. Skaanderup, Mario van der Stelt, Boris Vauzeilles, Olalla Vazquez, Yves P. Auberson

Summary: The EFMC is a federation of learned societies in Europe, focusing on the dynamic field spanning chemical biology and medicinal chemistry. The organization aims to drive the development of new drug candidates through the design, synthesis, and optimization of biologically active molecules.

CHEMBIOCHEM (2021)

Article Chemistry, Multidisciplinary

Rearrangement of Thiodepsipeptides by S → N Acyl Shift Delivers Homodetic Autoinducing Peptides

Bengt H. Gless, Benjamin S. Bejder, Fabrizio Monda, Martin S. Bojer, Hanne Ingmer, Christian A. Olsen

Summary: Research has shown that pentameric AIPs presumed to contain thiolactone structures can readily rearrange into homodetic cyclopeptides, leading to implications for a better understanding of cross-species communication in bacteria and potentially guiding the discovery of peptide ligands to disrupt their function.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

Article Multidisciplinary Sciences

Class I histone deacetylases (HDAC1-3) are histone lysine delactylases

Carlos Moreno-Yruela, Di Zhang, Wei Wei, Michael Baek, Wenchao Liu, Jinjun Gao, Daniela Dankova, Alexander L. Nielsen, Julie E. Bolding, Lu Yang, Samuel T. Jameson, Jiemin Wong, Christian A. Olsen, Yingming Zhao

Summary: Lysine L-lactylation is a newly discovered histone modification that is stimulated under conditions of high glycolysis. Through systematic evaluation of histone deacetylases (HDACs), HDAC1-3 and SIRT1-3 were identified as delactylases for this modification. This study provides important insights into the regulatory mechanisms of histone lactylation.

SCIENCE ADVANCES (2022)

Article Chemistry, Multidisciplinary

Investigation of Carboxylic Acid Isosteres and Prodrugs for Inhibition of the Human SIRT5 Lysine Deacylase Enzyme

Nima Rajabi, Tobias N. Hansen, Alexander L. Nielsen, Huy T. Nguyen, Michael Baek, Julie E. Bolding, Oskar O. Bahlke, Sylvester E. G. Petersen, Christian R. O. Bartling, Kristian Stromgaard, Christian A. Olsen

Summary: In this study, potent small molecule inhibitors targeting SIRT5 were developed, which showed selective growth inhibition of leukemia cells in culture. This work demonstrates that masked isosteres of carboxylic acids can serve as viable chemical motifs for the development of inhibitors targeting mitochondrial enzymes, with potential applications beyond the sirtuin field.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2022)

Article Chemistry, Medicinal

Determination of Slow-Binding HDAC Inhibitor Potency and Subclass Selectivity

Carlos Moreno-Yruela, Christian A. Olsen

Summary: This study highlights the importance of thorough kinetic investigation in the development of selective HDAC probes. Potent inhibitors of HDACs 1-3 often display slow-binding kinetics, and this study compares the potencies and selectivities of slow-binding inhibitors measured by discontinuous and continuous assays.

ACS MEDICINAL CHEMISTRY LETTERS (2022)

Article Chemistry, Multidisciplinary

In Vivo Neutralization of Myotoxin II, a Phospholipase A2 Homologue from Bothrops asper Venom, Using Peptides Discovered via Phage Display Technology

Andreas H. Laustsen, Bengt H. Gless, Timothy P. Jenkins, Maria Meyhoff-Madsen, Johanna Bjartun, Andreas S. Munk, Saioa Oscoz, Julian Fernandez, Jose Maria Gutierrez, Bruno Lomonte, Brian Lohse

Summary: The study identified a new peptide (JB006) through phage display technology that can bind to and neutralize the toxic effects of myotoxin II, offering potential for developing inhibitors that can neutralize this toxin.

ACS OMEGA (2022)

Article Chemistry, Multidisciplinary

Aryl Fluorosulfate Based Inhibitors That Covalently Target the SIRT5 Lysine Deacylase

Julie E. Bolding, Pablo Martin-Gago, Nima Rajabi, Luke F. Gamon, Tobias N. Hansen, Christian R. O. Bartling, Kristian Stromgaard, Michael J. Davies, Christian A. Olsen

Summary: This study demonstrates the use of aryl fluorosulfate electrophiles as covalent inhibitors targeting SIRT5, providing a potential avenue for the development of drug candidates.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2022)

Article Chemistry, Multidisciplinary

Forster Resonance Energy Transfer Assay for Investigating the Reactivity of Thioesters in Biochemistry and Native Chemical Ligation

Bengt H. Gless, Sabrina H. Schmied, Benjamin S. Bejder, Christian A. Olsen

Summary: Thioesters are energy-rich functional groups that can react in an aqueous medium due to their hydrolytic stability at neutral pH. This study investigates the reactivity of thioesters mimicking acyl-coenzyme A (CoA) species and S-acylcysteine modifications, as well as aryl thioesters used in chemical protein synthesis. The researchers developed a fluorogenic assay to directly measure the reaction rate between thioesters and nucleophiles, and found differences in the acylation ability of acetyl- and succinyl-CoA mimics. Furthermore, the study revealed the impact of tris-(2-carboxyethyl)phosphine (TCEP) on native chemical ligation reaction conditions, including potentially harmful hydrolysis side reactions.

JACS AU (2023)

Article Oncology

SIRT5 Is a Druggable Metabolic Vulnerability in Acute Myeloid Leukemia

Dongqing Yan, Anca Franzini, Anthony D. Pomicter, Brayden J. Halverson, Orlando Antelope, Clinton C. Mason, Jonathan M. Ahmann, Anna Senina, Nadeem A. Vellore, Courtney L. Jones, Matthew S. Zabriskie, Hein Than, Michael J. Xiao, Alexandria van Scoyk, Ami B. Patel, Phillip M. Clair, William L. Heaton, Shawn C. Owen, Joshua L. Andersen, Christina M. Egbert, Julie A. Reisz, Angelo D'Alessandro, James E. Cox, Kevin C. Gantz, Hannah M. Redwine, Siddharth M. Iyer, Jamshid S. Khorashad, Nima Rajabi, Christian A. Olsen, Thomas O'Hare, Michael W. Deininger

Summary: SIRT5 is crucial for the survival and growth of AML cells, regardless of genotype, by controlling key metabolic pathways. Inhibiting SIRT5 activity is detrimental to AML cells but well tolerated by healthy hematopoietic cells, making it a potential therapeutic target for AML.

BLOOD CANCER DISCOVERY (2021)

Article Biochemistry & Molecular Biology

Mechanism-based inhibitors of SIRT2: structure-activity relationship, X-ray structures, target engagement, regulation of α-tubulin acetylation and inhibition of breast cancer cell migration

Alexander L. Nielsen, Nima Rajabi, Norio Kudo, Kathrine Lundo, Carlos Moreno-Yruela, Michael Baek, Martin Fontenas, Alessia Lucidi, Andreas S. Madsen, Minoru Yoshida, Christian A. Olsen

Summary: SIRT2 is a protein deacylase enzyme that influences diverse biological functions in the cell, making it a potential drug target for neurodegenerative diseases and cancer. Researchers have developed a series of chemical probes with potent inhibitory effects on SIRT2-mediated deacetylation and demyristoylation, providing a foundation for future therapeutic development.

RSC CHEMICAL BIOLOGY (2021)

Article Biochemistry & Molecular Biology

Mitochondria-targeted inhibitors of the human SIRT3 lysine deacetylase

Kathrin S. Troelsen, Michael Baek, Alexander L. Nielsen, Andreas S. Madsen, Nima Rajabi, Christian A. Olsen

Summary: The study developed a strategy for selectively inhibiting SIRT3 in cells by incorporating mitochondria-targeting peptide sequences into inhibitor structures, demonstrating excellent mitochondrial localization in HeLa cells and target engagement through a cellular thermal shift assay. This selective inhibition showed increased acetylation of the documented SIRT3 target MnSOD in cells, indicating potential for further investigation of SIRT3 as a drug target.

RSC CHEMICAL BIOLOGY (2021)

Article Biochemical Research Methods

High-throughput screening of histone deacetylases and determination of kinetic parameters using fluorogenic assays

Carlos Moreno-Yruela, Christian A. Olsen

Summary: Histone deacetylases (HDACs) are enzymes that cleave post-translational e-N-acyllysine modifications. A high-throughput screening protocol is described to identify deacylase activities, with careful optimization of continuous enzyme assays to determine kinetic parameters efficiently. These techniques can aid in inhibitor assay design and provide fundamental understanding of HDAC biochemistry.

STAR PROTOCOLS (2021)

暂无数据