Protein modeling and molecular dynamics simulation of the two novel surfactant proteins SP-G and SP-H

SFTA3, a novel protein of the lung: three-dimensional structure, characterisation and immune activation

(2014) M. Schicht et al.   EUROPEAN RESPIRATORY JOURNAL

Coarse-Grained Models for Protein-Cell Membrane Interactions

(2013) Ryan Bradley et al.   Polymers

Orientation and depth of surfactant protein B C-terminal helix in lung surfactant bilayers

(2012) Philippe Bertani et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

A Unique Sugar-binding Site Mediates the Distinct Anti-influenza Activity of Pig Surfactant Protein D

(2012) Martin van Eijk et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ExPASy: SIB bioinformatics resource portal

(2012) P. Artimo et al.   NUCLEIC ACIDS RESEARCH

“SP-G”, a Putative New Surfactant Protein – Tissue Localization and 3D Structure

(2012) Felix Rausch et al.   PLoS One

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Folding of lipid monolayers containing lung surfactant proteins SP-B 1 – 25 and SP-C studied via coarse-grained molecular dynamics simulations

(2010) Susan L. Duncan et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Direct Simulation of Protein-Mediated Vesicle Fusion: Lung Surfactant Protein B

(2010) Svetlana Baoukina et al.   BIOPHYSICAL JOURNAL

Single-photon fluorescence enhancement in IR144 by phase-modulated femtosecond pulses

(2010) Hui Zhang et al.   CHEMICAL PHYSICS LETTERS

Interfacial Reactions of Ozone with Surfactant Protein B in a Model Lung Surfactant System

(2010) Hugh I. Kim et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Free Volume Theory Applied to Lateral Diffusion in Langmuir Monolayers: Atomistic Simulations for a Protein-Free Model of Lung Surfactant

(2010) Matti Javanainen et al.   LANGMUIR

QM/MM Methods for Biomolecular Systems

(2009) Hans Martin Senn et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Unbinding of glucose from human pulmonary surfactant protein D studied by steered molecular dynamics simulations

(2009) Ji-long Zhang et al.   CHEMICAL PHYSICS LETTERS

Lipid Models for United-Atom Molecular Dynamics Simulations of Proteins

(2009) Andreas Kukol   Journal of Chemical Theory and Computation

Molecular Dynamics Simulations of Liquid Condensed to Liquid Expanded Transitions in DPPC Monolayers

(2009) Delara Mohammad-Aghaie et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8

(2009) Elmar Krieger et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Molecular dynamics simulations of lung surfactant lipid monolayers

(2008) Doyle Rose et al.   BIOPHYSICAL CHEMISTRY

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Surfactants: past, present and future

(2008) H L Halliday   Journal of Perinatology

CSS-Palm 2.0: an updated software for palmitoylation sites prediction

(2008) J. Ren et al.   PROTEIN ENGINEERING DESIGN & SELECTION

P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation

(2007) Berk Hess   Journal of Chemical Theory and Computation

Signal peptide prediction based on analysis of experimentally verified cleavage sites

(2004) Zemin Zhang et al.   PROTEIN SCIENCE