Reconstructing the Fungal Tree of Life Using Phylogenomics and a Preliminary Investigation of the Distribution of Yeast Prion-Like Proteins in the Fungal Kingdom

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser

(2012) David A Fitzpatrick et al.   BMC GENOMICS

Aplysia CPEB Can Form Prion-like Multimers in Sensory Neurons that Contribute to Long-Term Facilitation

(2010) Kausik Si et al.   CELL

Complete mitochondrial genome sequence of the yeast Pichia farinosa and comparative analysis of closely related species

(2010) Paul P. Jung et al.   CURRENT GENETICS

Prion amyloid structure explains templating: how proteins can be genes

(2010) Reed B. Wickner et al.   FEMS YEAST RESEARCH

Deep Genomic-Scale Analyses of the Metazoa Reject Coelomata: Evidence from Single- and Multigene Families Analyzed Under a Supertree and Supermatrix Paradigm

(2010) Thérèse A. Holton et al.   Genome Biology and Evolution

A unique wheat disease resistance-like gene governs effector-triggered susceptibility to necrotrophic pathogens

(2010) J. D. Faris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

A Systematic Survey Identifies Prions and Illuminates Sequence Features of Prionogenic Proteins

(2009) Simon Alberti et al.   CELL

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

Genome sequence of the recombinant protein production host Pichia pastoris

(2009) Kristof De Schutter et al.   NATURE BIOTECHNOLOGY

The Tree versus the Forest: The Fungal Tree of Life and the Topological Diversity within the Yeast Phylome

(2009) Marina Marcet-Houben et al.   PLoS One

The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits

(2009) Conrad L. Schoch et al.   SYSTEMATIC BIOLOGY

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

(2008) A. Wehe et al.   BIOINFORMATICS

Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis

(2008) David A Fitzpatrick et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenomic Analyses Support the Monophyly of Taphrinomycotina, including Schizosaccharomyces Fission Yeasts

(2008) Y. Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic analysis of Aspergillus species using DNA sequences from four loci

(2008) S. W. Peterson   MYCOLOGIA

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

(2008) N. Lartillot et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Alignment Uncertainty and Genomic Analysis

(2008) K. M. Wong et al.   SCIENCE