New Paramecium (Ciliophora, Oligohymenophorea) congeners shape our view on its biodiversity

The first European stand of Paramecium sonneborni (P. aurelia complex), a species known only from North America (Texas, USA)

(2014) Ewa Przyboś et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Hidden Diversity in Sardines: Genetic and Morphological Evidence for Cryptic Species in the Goldstripe Sardinella, Sardinella gibbosa (Bleeker, 1849)

(2014) Rey C. Thomas et al.   PLoS One

New Stands of Species of the Paramecium aurelia Complex (Ciliophora, Protista) in Russia (Siberia, Kamchatka)

(2013) Ewa Przyboś et al.   FOLIA BIOLOGICA-KRAKOW

How to describe a cryptic species? Practical challenges of molecular taxonomy

(2013) Katharina M Jörger et al.   Frontiers in Zoology

Multiple Lines of Evidence Shed Light on the Occurrence ofParamecium(Ciliophora, Oligohymenophorea) in Bromeliad Tank Water

(2013) Paulo R. B. Buosi et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Ecological Differentiation of Cryptic Species within an Asexual Protist Morphospecies: A Case Study of Filamentous Green AlgaKlebsormidium(Streptophyta)

(2013) Pavel Škaloud et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

An assessment of haplotype variation in ribosomal and mitochondrial DNA fragments suggests incomplete lineage sorting in some species of the Paramecium aurelia complex (Ciliophora, Protozoa)

(2013) Sebastian Tarcz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sampling strategies for improving tree accuracy and phylogenetic analyses: A case study in ciliate protists, with notes on the genus Paramecium

(2013) Zhenzhen Yi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic Differentiation of the Mitochondrial Cytochrome Oxidase c Subunit I Gene in Genus Paramecium (Protista, Ciliophora)

(2013) Yan Zhao et al.   PLoS One

Cryptic species in the cosmopolitanBugula neritinacomplex (Bryozoa, Cheilostomata)

(2013) Karin H. Fehlauer-Ale et al.   ZOOLOGICA SCRIPTA

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Morphological and Molecular Characterization ofParamecium(Viridoparameciumnov. subgen.)chlorelligerumKahl (Ciliophora)

(2012) Martin Kreutz et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Variation in ribosomal and mitochondrial DNA sequences demonstrates the existence of intraspecific groups in Paramecium multimicronucleatum (Ciliophora, Oligohymenophorea)

(2012) Sebastian Tarcz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Survey of Paramecium duboscqui using three markers and assessment of the molecular variability in the genus Paramecium

(2012) Vittorio Boscaro et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Coping with Temperature at the Warm Edge – Patterns of Thermal Adaptation in the Microbial Eukaryote Paramecium caudatum

(2012) Sascha Krenek et al.   PLoS One

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

On the nature of species: insights from Paramecium and other ciliates

(2011) Meaghan S. Hall et al.   GENETICA

Need morphology always be required for new species descriptions?

(2011) L. G. Cook et al.   INVERTEBRATE SYSTEMATICS

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

(2011) R. Sanchez et al.   NUCLEIC ACIDS RESEARCH

COI Barcoding of Nebelid Testate Amoebae (Amoebozoa: Arcellinida): Extensive Cryptic Diversity and Redefinition of the Hyalospheniidae Schultze

(2011) Anush Kosakyan et al.   PROTIST

Identification of Paramecium bursaria Syngens through Molecular Markers – Comparative Analysis of Three Loci in the Nuclear and Mitochondrial DNA

(2011) Magdalena Greczek-Stachura et al.   PROTIST

A Two-locus Molecular Characterization of Paramecium calkinsi

(2011) Ewa Przyboś et al.   PROTIST

Comparative analysis of the mitochondrial cytochromecoxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker

(2011) Michaela C. Strüder-Kypke et al.   SYSTEMATICS AND BIODIVERSITY

Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description

(2010) Paul Z. Goldstein et al.   BIOESSAYS

What We Don't Recognize Can Hurt Us: A Plea for Awareness About Cryptic Species

(2010) Gerardo Pérez-Ponce de León et al.   JOURNAL OF PARASITOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

DNA taxonomy in morphologically plastic taxa: Algorithmic species delimitation in the Boodlea complex (Chlorophyta: Cladophorales)

(2009) Frederik Leliaert et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY