A short LSU rRNA fragment as a standard marker for integrative taxonomy in calcareous sponges (Porifera: Calcarea)

Integrative taxonomy of calcareous sponges (subclass Calcinea) from the Peruvian coast: morphology, molecules, and biogeography

(2015) Fernanda Azevedo et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Calcareous sponges of Indonesia

(2015) ROB W.M. VAN SOEST   ZOOTAXA

Assessing the State of Substitution Models Describing Noncoding RNA Evolution

(2014) James E. Allen et al.   Genome Biology and Evolution

Integrative taxonomy of four Clathrina species of the Adriatic Sea, with the first formal description of Clathrina rubra Sarà, 1958

(2013) Mirna Imešek et al.   ORGANISMS DIVERSITY & EVOLUTION

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Mitochondrial DNA of Clathrina clathrus (Calcarea, Calcinea): Six Linear Chromosomes, Fragmented rRNAs, tRNA Editing, and a Novel Genetic Code

(2012) Dennis V. Lavrov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Phylogenetic Evaluation of Classification and Scenarios of Character Evolution in Calcareous Sponges (Porifera, Class Calcarea)

(2012) Oliver Voigt et al.   PLoS One

First evaluation of mitochondrial DNA as a marker for phylogeographic studies of Calcarea: a case study from Leucetta chagosensis

(2011) Oliver Voigt et al.   HYDROBIOLOGIA

Phylogenetic signal in the evolution of body colour and spicule skeleton in calcareous sponges

(2011) ANDRÉ LINHARES ROSSI et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)

(2010) Judith Pöppe et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Phylogenomics Revives Traditional Views on Deep Animal Relationships

(2009) Hervé Philippe et al.   CURRENT BIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Accurate and efficient reconstruction of deep phylogenies from structured RNAs

(2009) Roman R. Stocsits et al.   NUCLEIC ACIDS RESEARCH

Deep genetic divergences among Indo-Pacific populations of the coral reef sponge Leucetta chagosensis (Leucettidae): Founder effects, vicariance, or both?

(2008) Gert Wörheide et al.   BMC EVOLUTIONARY BIOLOGY

Molecular evolution of rDNA in early diverging Metazoa: First comparative analysis and phylogenetic application of complete SSU rRNA secondary structures in Porifera

(2008) Oliver Voigt et al.   BMC EVOLUTIONARY BIOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION