Diagnosis and discovery of fungal viruses using deep sequencing of small RNAs

Heterobasidion wood decay fungi host diverse and globally distributed viruses related to Helicobasidium mompa partitivirus V70

(2015) M. Kashif et al.   VIRUS RESEARCH

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Three mitovirus strains infecting a single isolate of Fusarium circinatum are the first putative members of the family Narnaviridae detected in a fungus of the genus Fusarium

(2014) Pablo Martínez-Álvarez et al.   ARCHIVES OF VIROLOGY

Detection and genetic characterisation of a novel mycovirus in Hymenoscyphus fraxineus, the causal agent of ash dieback

(2014) Corine N. Schoebel et al.   INFECTION GENETICS AND EVOLUTION

Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research

(2014) Max L. Nibert et al.   VIRUS RESEARCH

Molecular characterization of HetRV8-ir1, a partitivirus of the invasive conifer pathogenic fungus Heterobasidion irregulare

(2013) Eeva J. Vainio et al.   ARCHIVES OF VIROLOGY

A Novel Victorivirus from a Phytopathogenic Fungus, Rosellinia necatrix, Is Infectious as Particles and Targeted by RNA Silencing

(2013) S. Chiba et al.   JOURNAL OF VIROLOGY

Evolution of RNA interference proteins dicer and argonaute in Basidiomycota

(2013) Yang Hu et al.   MYCOLOGIA

A mycoreovirus suppresses RNA silencing in the white root rot fungus, Rosellinia necatrix

(2013) Hajime Yaegashi et al.   VIROLOGY

RNA Interference Pathways in Fungi: Mechanisms and Functions

(2012) Shwu-Shin Chang et al.   Annual Review of Microbiology

A novel mycovirus from Clitocybe odora

(2012) Cornelia Heinze   ARCHIVES OF VIROLOGY

Are communities of microbial symbionts more diverse than communities of macrobial hosts?

(2012) Tracy S. Feldman et al.   Fungal Biology

Effects of Defective Interfering RNA on Symptom Induction by, and Replication of, a Novel Partitivirus from a Phytopathogenic Fungus, Rosellinia necatrix

(2012) S. Chiba et al.   JOURNAL OF VIROLOGY

Variations in Hypovirus Interactions with the Fungal-Host RNA-Silencing Antiviral-Defense Response

(2012) X. Zhang et al.   JOURNAL OF VIROLOGY

Virus Community Dynamics in the Conifer Pathogenic Fungus Heterobasidion parviporum Following an Artificial Introduction of a Partitivirus

(2012) Eeva J. Vainio et al.   MICROBIAL ECOLOGY

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

(2012) Åke Olson et al.   NEW PHYTOLOGIST

Detection of Viruses in Sweetpotato from Honduras and Guatemala Augmented by Deep-Sequencing of Small-RNAs

(2012) M. Kashif et al.   PLANT DISEASE

Small-RNA Deep Sequencing Reveals Arctium tomentosum as a Natural Host of Alstroemeria virus X and a New Putative Emaravirus

(2012) Yaqi Bi et al.   PLoS One

A novel quadripartite dsRNA virus isolated from a phytopathogenic filamentous fungus, Rosellinia necatrix

(2012) Yu-Hsin Lin et al.   VIROLOGY

Exotic and indigenous viruses infect wild populations and captive collections of temperate terrestrial orchids (Diuris species) in Australia

(2012) Stephen J. Wylie et al.   VIRUS RESEARCH

Species of Heterobasidion host a diverse pool of partitiviruses with global distribution and interspecies transmission

(2011) Eeva J. Vainio et al.   Fungal Biology

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Compatibility with Killer Explains the Rise of RNAi-Deficient Fungi

(2011) I. A. Drinnenberg et al.   SCIENCE

Population structure of a novel putative mycovirus infecting the conifer root-rot fungus Heterobasidion annosum sensu lato

(2011) Eeva J. Vainio et al.   VIROLOGY

Widespread Endogenization of Genome Sequences of Non-Retroviral RNA Viruses into Plant Genomes

(2011) Sotaro Chiba et al.   PLoS Pathogens

The complete genome sequence of a Passion fruit woodiness virus isolate from Australia determined using deep sequencing, and its relationship to other potyviruses

(2010) Stephen J. Wylie et al.   ARCHIVES OF VIROLOGY

Description of a new putative virus infecting the conifer pathogenic fungus Heterobasidion parviporum with resemblance to Heterobasidion annosum P-type partitivirus

(2010) Eeva J. Vainio et al.   ARCHIVES OF VIROLOGY

Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses

(2010) M. Al Rwahnih et al.   ARCHIVES OF VIROLOGY

A novel putative partitivirus of the saprotrophic fungus Heterobasidion ecrustosum infects pathogenic species of the Heterobasidion annosum complex

(2010) Eeva J. Vainio et al.   Fungal Biology

Widespread Horizontal Gene Transfer from Double-Stranded RNA Viruses to Eukaryotic Nuclear Genomes

(2010) H. Liu et al.   JOURNAL OF VIROLOGY

A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus

(2010) X. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs

(2010) Q. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine

(2010) Vitantonio Pantaleo et al.   VIROLOGY

Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard

(2010) Beatrix Coetzee et al.   VIROLOGY

WS-5995 B, an antifungal agent inducing differential gene expression in the conifer pathogen Heterobasidion annosum but not in Heterobasidion abietinum

(2009) Nina A. Lehr et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A Novel Bipartite Double-Stranded RNA Mycovirus from the White Root Rot Fungus Rosellinia necatrix: Molecular and Biological Characterization, Taxonomic Considerations, and Potential for Biological Control

(2009) S. Chiba et al.   JOURNAL OF VIROLOGY

RNAi in Budding Yeast

(2009) I. A. Drinnenberg et al.   SCIENCE

Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus

(2009) M. Al Rwahnih et al.   VIROLOGY

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

(2009) Jan F. Kreuze et al.   VIROLOGY

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Characterization of Hypovirus-Derived Small RNAs Generated in the Chestnut Blight Fungus by an Inducible DCL-2-Dependent Pathway

(2008) X. Zhang et al.   JOURNAL OF VIROLOGY