Rapid, economical single-nucleotide polymorphism and microsatellite discovery based onde novoassembly of a reduced representation genome in a non-model organism: a case study of Atlantic codGadus morhua

Identification of single nucleotide polymorphisms in candidate genes for growth and reproduction in a nonmodel organism; the Atlantic cod,Gadus morhua

(2011) JAKOB HEMMER-HANSEN et al.   Molecular Ecology Resources

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

(2011) S. J. HELYAR et al.   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

The genome sequence of Atlantic cod reveals a unique immune system

(2011) Bastiaan Star et al.   NATURE

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Formulating a Historical and Demographic Model of Recent Human Evolution Based on Resequencing Data from Noncoding Regions

(2010) Guillaume Laval et al.   PLoS One

Microsatellite discovery by deep sequencing of enriched genomic libraries

(2009) Quentin C. Santana et al.   BIOTECHNIQUES

Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data

(2009) Morten E. Allentoft et al.   BIOTECHNIQUES

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library

(2009) Cecilia Sánchez et al.   BMC GENOMICS

Characterization of 155 EST-derived microsatellites from Atlantic cod (Gadus morhua) and validation for linkage mapping

(2009) B. HIGGINS et al.   Molecular Ecology Resources

Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence

(2009) TODD A. CASTOE et al.   Molecular Ecology Resources

SNP Discovery via Genomic Reduction, Barcoding, and 454-Pyrosequencing in Amaranth

(2009) Peter J. Maughan et al.   Plant Genome

Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

(2008) Thomas Moen et al.   BMC GENETICS

SNP discovery in swine by reduced representation and high throughput pyrosequencing

(2008) Ralph T Wiedmann et al.   BMC GENETICS

Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias

(2008) M. Brandstrom et al.   GENOME RESEARCH

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources