Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato

Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors

(2014) D. Roeland Boer et al.   CELL

DNA-binding specificities of plant transcription factors and their potential to define target genes

(2014) José M. Franco-Zorrilla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato

(2013) Zejun Huang et al.   MOLECULAR GENETICS AND GENOMICS

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

IAA-Ala Resistant3, an Evolutionarily Conserved Target of miR167, Mediates Arabidopsis Root Architecture Changes during High Osmotic Stress

(2012) N. Kinoshita et al.   PLANT CELL

SoMART: a web server for plant miRNA, tasiRNA and target gene analysis

(2012) Feng Li et al.   PLANT JOURNAL

Variation Revealed by SNP Genotyping and Morphology Provides Insight into the Origin of the Tomato

(2012) Jose Blanca et al.   PLoS One

A Regulatory Network for Coordinated Flower Maturation

(2012) Paul H. Reeves et al.   PLoS Genetics

Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

(2011) Hongyan Xing et al.   BMC GENOMICS

HALF FILLED promotes reproductive tract development and fertilization efficiency in Arabidopsis thaliana

(2011) B. C. W. Crawford et al.   DEVELOPMENT

Knockdown of MYB305 disrupts nectary starch metabolism and floral nectar production

(2011) Guangyu Liu et al.   PLANT JOURNAL

EOBII Controls Flower Opening by Functioning as a General Transcriptomic Switch

(2011) T. A. Colquhoun et al.   PLANT PHYSIOLOGY

SUN Regulates Vegetative and Reproductive Organ Shape by Changing Cell Division Patterns

(2011) S. Wu et al.   PLANT PHYSIOLOGY

EOBII, a Gene Encoding a Flower-Specific Regulator of Phenylpropanoid Volatiles' Biosynthesis in Petunia

(2010) Ben Spitzer-Rimon et al.   PLANT CELL

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Integration of tomato reproductive developmental landmarks and expression profiles, and the effect of SUN on fruit shape

(2009) Han Xiao et al.   BMC PLANT BIOLOGY

Arabidopsis AUXIN RESPONSE FACTOR6 and 8 Regulate Jasmonic Acid Biosynthesis and Floral Organ Development via Repression of Class 1 KNOX Genes

(2009) Ryo Tabata et al.   PLANT AND CELL PHYSIOLOGY

The MYB305 Transcription Factor Regulates Expression of Nectarin Genes in the Ornamental Tobacco Floral Nectary

(2009) G. Liu et al.   PLANT CELL

Ovule development: genetic trends and evolutionary considerations

(2009) Dior R. Kelley et al.   SEXUAL PLANT REPRODUCTION

Gibberellin Acts through Jasmonate to Control the Expression of MYB21, MYB24, and MYB57 to Promote Stamen Filament Growth in Arabidopsis

(2009) Hui Cheng et al.   PLoS Genetics

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Evidence for stage-specific modulation of specific microRNAs (miRNAs) and miRNA processing components in zygotic embryo and female gametophyte of loblolly pine (Pinus taeda)

(2008) Thomas J. Oh et al.   NEW PHYTOLOGIST

Auxin-induced fruit-set in tomato is mediated in part by gibberellins

(2008) Juan Carlos Serrani et al.   PLANT JOURNAL

A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit

(2008) H. Xiao et al.   SCIENCE

Small RNAs in tomato fruit and leaf development

(2007) A ITAYA et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms