An epigenetic view of plant cells cultured in vitro: somaclonal variation and beyond

An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data

(2010) Congmao Wang et al.   BMC BIOINFORMATICS

Stc1: A Critical Link between RNAi and Chromatin Modification Required for Heterochromatin Integrity

(2010) Elizabeth H. Bayne et al.   CELL

MicroRNAs as Regulators of Differentiation and Cell Fate Decisions

(2010) Kathryn N. Ivey et al.   Cell Stem Cell

A comprehensive understanding of plant growth and development

(2010) Jiayang Li et al.   CURRENT OPINION IN PLANT BIOLOGY

MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis

(2010) M. D. Nodine et al.   GENES & DEVELOPMENT

Widespread and tissue specific age-related DNA methylation changes in mice

(2010) S. Maegawa et al.   GENOME RESEARCH

Impact of nucleosome dynamics and histone modifications on cell proliferation during Arabidopsis development

(2010) B Desvoyes et al.   HEREDITY

Modulation of embryo-forming capacity in culture through the expression of Brassica genes involved in the regulation of the shoot apical meristem

(2010) Mohamed Elhiti et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)

(2010) Kerstin Kaufmann et al.   Nature Protocols

Progressive erosion of genetic and epigenetic variation in callus-derived cocoa (Theobroma cacao) plants

(2010) Carlos M. Rodríguez López et al.   NEW PHYTOLOGIST

The CURLY LEAF Interacting Protein BLISTER Controls Expression of Polycomb-Group Target Genes and Cellular Differentiation of Arabidopsis thaliana

(2010) N. Schatlowski et al.   PLANT CELL

Flow Cytometry, HPLC-RP, and metAFLP Analyses to Assess Genetic Variability in Somatic Embryo-Derived Plantlets of Gentiana pannonica Scop

(2010) Agnieszka Fiuk et al.   PLANT MOLECULAR BIOLOGY REPORTER

Putative Arabidopsis Transcriptional Adaptor Protein (PROPORZ1) is required to modulate histone acetylation in response to auxin

(2010) J. M. Anzola et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNA Duplexes Function as Mobile Silencing Signals Between Plant Cells

(2010) P. Dunoyer et al.   SCIENCE

Phylogeny of Methylomes

(2010) A. Jeltsch   SCIENCE

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

(2010) A. Molnar et al.   SCIENCE

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

(2009) Ryan Lister et al.   CURRENT OPINION IN PLANT BIOLOGY

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

(2009) E. Hodges et al.   GENOME RESEARCH

In Vitro Micropropagation of Freesia hybrida and the Assessment of Genetic and Epigenetic Stability in Regenerated Plantlets

(2009) Xiang Gao et al.   JOURNAL OF PLANT GROWTH REGULATION

Variations in DNA methylation, acetylated histone H4, and methylated histone H3 during Pinus radiata needle maturation in relation to the loss of in vitro organogenic capability

(2009) Luis Valledor et al.   JOURNAL OF PLANT PHYSIOLOGY

Chromatin Remodeling in Stem Cell Maintenance in Arabidopsis thaliana

(2009) Wen-Hui Shen et al.   Molecular Plant

Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize

(2009) X. Wang et al.   PLANT CELL

Members of the GCN5 Histone Acetyltransferase Complex Regulate PLETHORA-Mediated Root Stem Cell Niche Maintenance and Transit Amplifying Cell Proliferation in Arabidopsis

(2009) N. Kornet et al.   PLANT CELL

DNA-methylation changes in grapevine somaclones following in vitro culture and thermotherapy

(2009) Miroslav Baránek et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Cell Culture-Induced Gradual and Frequent Epigenetic Reprogramming of Invertedly Repeated Tobacco Transgene Epialleles

(2009) K. Krizova et al.   PLANT PHYSIOLOGY

The stem cell—Chromatin connection

(2009) Yi Sang et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Functional Anatomy of Polycomb and Trithorax Chromatin Landscapes in Drosophila Embryos

(2009) Bernd Schuettengruber et al.   PLOS BIOLOGY

CHD3 Proteins and Polycomb Group Proteins Antagonistically Determine Cell Identity in Arabidopsis

(2009) Ernst Aichinger et al.   PLoS Genetics

DNA Methylation Analysis of Chromosome 21 Gene Promoters at Single Base Pair and Single Allele Resolution

(2009) Yingying Zhang et al.   PLoS Genetics

Variation in DNA methylation patterns of grapevine somaclones (Vitis vinifera L.)

(2008) Paul Schellenbaum et al.   BMC PLANT BIOLOGY

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Chromatin and the cell cycle meet in Madrid

(2008) M. Dominguez et al.   DEVELOPMENT

Biological characterization of young and aged embryogenic cultures of Pinus pinaster (Ait.)

(2008) K. Klimaszewska et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Detection of epigenetic variation in tissue-culture-derived plants of Doritaenopsis by methylation-sensitive amplification polymorphism (MSAP) analysis

(2008) S. Y. Park et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Isolation and expression analysis of genes encoding MET, CMT, and DRM methyltransferases in oil palm (Elaeis guineensis Jacq.) in relation to the ‘mantled’ somaclonal variation

(2008) Alain Rival et al.   JOURNAL OF EXPERIMENTAL BOTANY

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

Promoter DNA Hypermethylation and Gene Repression in Undifferentiated Arabidopsis Cells

(2008) María Berdasco et al.   PLoS One

Chromatin dynamics during the plant cell cycle

(2008) M SANCHEZ et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Keeping plants in shape: Polycomb-group genes and histone methylation

(2008) N SCHATLOWSKI et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

DNA methylation in different origin clonal offspring from a mature Sequoiadendron giganteum genotype

(2008) Olivier Monteuuis et al.   TREES-STRUCTURE AND FUNCTION

Epigenomic Consequences of Immortalized Plant Cell Suspension Culture

(2008) Milos Tanurdzic et al.   PLOS BIOLOGY

Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays

(2008) Xu Zhang et al.   PLoS Genetics