CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses
出版年份 2015 全文链接
标题
CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 43, Issue 8, Pages e51-e51
出版商
Oxford University Press (OUP)
发表日期
2015-02-05
DOI
10.1093/nar/gkv054
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Beanplot: A Boxplot Alternative for Visual Comparison of Distributions
- (2015) Peter Kampstra Journal of Statistical Software
- CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments
- (2014) E. Dimont et al. BIOINFORMATICS
- RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)
- (2014) Hiroko Ohmiya et al. BMC GENOMICS
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Two independent transcription initiation codes overlap on vertebrate core promoters
- (2014) Vanja Haberle et al. NATURE
- A promoter-level mammalian expression atlas
- (2014) NATURE
- Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis
- (2013) Chirag Nepal et al. GENOME RESEARCH
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates
- (2013) Hannah K Long et al. eLife
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Genome-wide analysis of promoter architecture in Drosophila melanogaster
- (2010) R. A. Hoskins et al. GENOME RESEARCH
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
- (2009) Harukazu Suzuki et al. NATURE GENETICS
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data
- (2009) Piotr J Balwierz et al. GENOME BIOLOGY
- Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference
- (2008) Michiel de Hoon et al. BIOTECHNIQUES
- Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
- (2008) E. Valen et al. GENOME RESEARCH
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