DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides

Overlap and diversity in antimicrobial peptide databases: compiling a non-redundant set of sequences

(2015) Longendri Aguilera-Mendoza et al.   BIOINFORMATICS

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

dbaasp: database of antimicrobial activity and structure of peptides

(2014) Giorgi Gogoladze et al.   FEMS MICROBIOLOGY LETTERS

Prediction of Linear Cationic Antimicrobial Peptides Based on Characteristics Responsible for Their Interaction with the Membranes

(2014) Boris Vishnepolsky et al.   Journal of Chemical Information and Modeling

Database resources of the National Center for Biotechnology Information

(2014)   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

(2014) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Analysis and visual summarization of molecular dynamics simulation

(2014) Fredrick Devadoss et al.   Journal of Cheminformatics

CAMP: Collection of sequences and structures of antimicrobial peptides

(2013) Faiza Hanif Waghu et al.   NUCLEIC ACIDS RESEARCH

AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses

(2013) Abid Qureshi et al.   NUCLEIC ACIDS RESEARCH

Therapeutic Potential of Host Defense Peptides in Antibiotic-resistant Infections

(2012) Nicole J. Afacan et al.   CURRENT PHARMACEUTICAL DESIGN

YADAMP: yet another database of antimicrobial peptides

(2012) Stefano P. Piotto et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites

(2012) Achchuthan Shanmugasundram et al.   NUCLEIC ACIDS RESEARCH

Insights into the mechanisms of action of host defence peptides from biophysical and structural investigations

(2011) Burkhard Bechinger   JOURNAL OF PEPTIDE SCIENCE

DAMPD: a manually curated antimicrobial peptide database

(2011) Vijayaraghava Seshadri Sundararajan et al.   NUCLEIC ACIDS RESEARCH

Simulaid: A simulation facilitator and analysis program

(2010) Mihaly Mezei   JOURNAL OF COMPUTATIONAL CHEMISTRY

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

(2009) M. J. Harvey et al.   Journal of Chemical Theory and Computation

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

APD2: the updated antimicrobial peptide database and its application in peptide design

(2008) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH