NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings

Biological and Therapeutic Impact of Intratumor Heterogeneity in Cancer Evolution

(2015) Nicholas McGranahan et al.   CANCER CELL

Foamy viral vector integration sites in SCID-repopulating cells after MGMTP140K-mediated in vivo selection

(2015) M E Olszko et al.   GENE THERAPY

A New Initiative on Precision Medicine

(2015) Francis S. Collins et al.   NEW ENGLAND JOURNAL OF MEDICINE

TERTpromoter mutations and telomerase reactivation in urothelial cancer

(2015) Sumit Borah et al.   SCIENCE

The human transcriptome across tissues and individuals

(2015) M. Mele et al.   SCIENCE

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Evaluation and integration of cancer gene classifiers: identification and ranking of plausible drivers

(2015) Yang Liu et al.   Scientific Reports

DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis

(2014) Guangchuang Yu et al.   BIOINFORMATICS

Two-layer modular analysis of gene and protein networks in breast cancer

(2014) Alok Srivastava et al.   BMC Systems Biology

Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation

(2014) Luke A. Gilbert et al.   CELL

A Genomic Analysis Pipeline and Its Application to Pediatric Cancers

(2014) Michael Zeller et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Studying Tumorigenesis through Network Evolution and Somatic Mutational Perturbations in the Cancer Interactome

(2014) Feixiong Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

A comprehensive transcriptional portrait of human cancer cell lines

(2014) Christiaan Klijn et al.   NATURE BIOTECHNOLOGY

The BioGRID interaction database: 2015 update

(2014) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

SMART: recent updates, new developments and status in 2015

(2014) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Algorithms for network-based identification of differential regulators from transcriptome data: a systematic evaluation

(2014) Hui Yu et al.   Science China-Life Sciences

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes

(2014) Omer An et al.   Database-The Journal of Biological Databases and Curation

Single-Nucleotide Polymorphisms Within MicroRNAs Sequences and Their 3' UTR Target Sites May Regulate Gene Expression in Gastrointestinal Tract Cancers

(2014) Zahra Saadatian et al.   Iranian Red Crescent Medical Journal

Clonal Dominance With Retroviral Vector Insertions Near the ANGPT1 and ANGPT2 Genes in a Human Xenotransplant Mouse Model

(2014) Reinhard Haemmerle et al.   Molecular Therapy-Nucleic Acids

Lessons from the Cancer Genome

(2013) Levi A. Garraway et al.   CELL

Efficiency and Safety of O6-Methylguanine DNA Methyltransferase (MGMTP140K)-Mediated In Vivo Selection in a Humanized Mouse Model

(2013) Ruhi Phaltane et al.   HUMAN GENE THERAPY

Mutational heterogeneity in cancer and the search for new cancer-associated genes

(2013) Michael S. Lawrence et al.   NATURE

Mutational landscape and significance across 12 major cancer types

(2013) Cyriac Kandoth et al.   NATURE

DGIdb: mining the druggable genome

(2013) Malachi Griffith et al.   NATURE METHODS

Genome engineering using the CRISPR-Cas9 system

(2013) F Ann Ran et al.   Nature Protocols

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions

(2013) Sheng-Da Hsu et al.   NUCLEIC ACIDS RESEARCH

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

RefSeq: an update on mammalian reference sequences

(2013) Kim D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

The ChEMBL bioactivity database: an update

(2013) A. Patrícia Bento et al.   NUCLEIC ACIDS RESEARCH

STITCH 4: integration of protein–chemical interactions with user data

(2013) Michael Kuhn et al.   NUCLEIC ACIDS RESEARCH

Disease Co-Morbidity and the Human Wnt Signaling Pathway: A Network-Wise Study

(2013) Losiana Nayak et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Cancer Genome Landscapes

(2013) B. Vogelstein et al.   SCIENCE

Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells

(2013) Ophir Shalem et al.   SCIENCE

Genetic Screens in Human Cells Using the CRISPR-Cas9 System

(2013) Tim Wang et al.   SCIENCE

Predicting potential cancer genes by integrating network properties, sequence features and functional annotations

(2013) Wei Liu et al.   Science China-Life Sciences

Frequency of TERT promoter mutations in human cancers

(2013) João Vinagre et al.   Nature Communications

Recessive Cancer Genes Engage in Negative Genetic Interactions with Their Functional Paralogs

(2013) Matteo D’Antonio et al.   Cell Reports

Integrated analysis of recurrent properties of cancer genes to identify novel drivers

(2013) Matteo D'Antonio et al.   GENOME BIOLOGY

Identification of somatic mutations in non-small cell lung carcinomas using whole-exome sequencing

(2012) Pengyuan Liu et al.   CARCINOGENESIS

MuSiC: Identifying mutational significance in cancer genomes

(2012) N. D. Dees et al.   GENOME RESEARCH

Systematic identification of genomic markers of drug sensitivity in cancer cells

(2012) Mathew J. Garnett et al.   NATURE

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

(2012) Jordi Barretina et al.   NATURE

Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome

(2012) Marija Milacic et al.   Cancers

Modification of Gene Duplicability during the Evolution of Protein Interaction Network

(2011) Matteo D'Antonio et al.   PLoS Computational Biology

Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa

(2010) Tomislav Domazet-Lošo et al.   BMC BIOLOGY

The cancer genome

(2009) Michael R. Stratton et al.   NATURE

Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes

(2009) Adnan S. Syed et al.   NUCLEIC ACIDS RESEARCH

CORUM: the comprehensive resource of mammalian protein complexes—2009

(2009) Andreas Ruepp et al.   NUCLEIC ACIDS RESEARCH

An Ancient Evolutionary Origin of Genes Associated with Human Genetic Diseases

(2008) T. Domazet-Loso et al.   MOLECULAR BIOLOGY AND EVOLUTION

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

miRecords: an integrated resource for microRNA-target interactions

(2008) F. Xiao et al.   NUCLEIC ACIDS RESEARCH

Low duplicability and network fragility of cancer genes

(2008) Davide Rambaldi et al.   TRENDS IN GENETICS