Identification of novel Arabidopsis thaliana upstream open reading frames that control expression of the main coding sequences in a peptide sequence-dependent manner

Ribosomes in a Stacked Array

(2014) Yui Yamashita et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Polyamine-Responsive Ribosomal Arrest at the Stop Codon of an Upstream Open Reading Frame of the AdoMetDC1 Gene Triggers Nonsense-Mediated mRNA Decay in Arabidopsis thaliana

(2014) Naoko Uchiyama-Kadokura et al.   PLANT AND CELL PHYSIOLOGY

Arrest Peptides:Cis-Acting Modulators of Translation

(2013) Koreaki Ito et al.   Annual Review of Biochemistry

Arabidopsis CBL-interacting protein kinase (CIPK6) is involved in plant response to salt/osmotic stress and ABA

(2013) Liang Chen et al.   MOLECULAR BIOLOGY REPORTS

Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan

(2013) A. K. Martinez et al.   NUCLEIC ACIDS RESEARCH

Regulation of plant translation by upstream open reading frames

(2013) Albrecht G. von Arnim et al.   PLANT SCIENCE

BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome

(2012) Hiro Takahashi et al.   BIOINFORMATICS

Translational regulation of Arabidopsis XIPOTL1 is modulated by phosphocholine levels via the phylogenetically conserved upstream open reading frame 30

(2012) Fulgencio Alatorre-Cobos et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arginine Changes the Conformation of the Arginine Attenuator Peptide Relative to the Ribosome Tunnel

(2012) Cheng Wu et al.   JOURNAL OF MOLECULAR BIOLOGY

The Arginine Attenuator Peptide Interferes with the Ribosome Peptidyl Transferase Center

(2012) J. Wei et al.   MOLECULAR AND CELLULAR BIOLOGY

Multisite Ribosomal Stalling: A Unique Mode of Regulatory Nascent Chain Action Revealed for MifM

(2012) Shinobu Chiba et al.   MOLECULAR CELL

An inhibitory effect of the sequence-conserved upstream open-reading frame on the translation of the main open-reading frame ofHsfB1transcripts inArabidopsis

(2012) XUJUN ZHU et al.   PLANT CELL AND ENVIRONMENT

Known and novel post-transcriptional regulatory sequences are conserved across plant families

(2012) J. N. Vaughn et al.   RNA

Conserved Peptide Upstream Open Reading Frames are Associated with Regulatory Genes in Angiosperms

(2012) Richard A. Jorgensen et al.   Frontiers in Plant Science

Calcium-dependent modulation and plasma membrane targeting of the AKT2 potassium channel by the CBL4/CIPK6 calcium sensor/protein kinase complex

(2011) Katrin Held et al.   CELL RESEARCH

Nascent polypeptide sequences that influence ribosome function

(2011) Luis Rogelio Cruz-Vera et al.   CURRENT OPINION IN MICROBIOLOGY

Phosphorylation of eIF2 Facilitates Ribosomal Bypass of an Inhibitory Upstream ORF to EnhanceCHOPTranslation

(2011) Lakshmi Reddy Palam et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Crucial elements that maintain the interactions between the regulatory TnaC peptide and the ribosome exit tunnel responsible for Trp inhibition of ribosome function

(2011) Allyson K. Martínez et al.   NUCLEIC ACIDS RESEARCH

Involvement of KDM1C histone demethylase-OTLD1 otubain-like histone deubiquitinase complexes in plant gene repression

(2011) A. Krichevsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SecM-Stalled Ribosomes Adopt an Altered Geometry at the Peptidyl Transferase Center

(2011) Shashi Bhushan et al.   PLOS BIOLOGY

Structural Basis for Translational Stalling by Human Cytomegalovirus and Fungal Arginine Attenuator Peptide

(2010) Shashi Bhushan et al.   MOLECULAR CELL

A ribosome–nascent chain sensor of membrane protein biogenesis in Bacillus subtilis

(2009) Shinobu Chiba et al.   EMBO JOURNAL

Effect of the sequence context of the AUG initiation codon on the rate of translation in dicotyledonous and monocotyledonous plant cells

(2009) Tadatoshi Sugio et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

The Plasticity of a Translation Arrest Motif Yields Insights into Nascent Polypeptide Recognition inside the Ribosome Tunnel

(2009) Mee-Ngan Yap et al.   MOLECULAR CELL

Programmed drug-dependent ribosome stalling

(2009) Haripriya Ramu et al.   MOLECULAR MICROBIOLOGY

CIPK6, a CBL-interacting protein kinase is required for development and salt tolerance in plants

(2009) Vineeta Tripathi et al.   PLANT JOURNAL

Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner

(2009) Tünde Nyikó et al.   PLANT MOLECULAR BIOLOGY

Sucrose Control of Translation Mediated by an Upstream Open Reading Frame-Encoded Peptide

(2009) F. Rahmani et al.   PLANT PHYSIOLOGY

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

(2009) S. E. Calvo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Insight into Nascent Polypeptide Chain-Mediated Translational Stalling

(2009) B. Seidelt et al.   SCIENCE

The RCC1 superfamily: From genes, to function, to disease

(2008) Ouadah Hadjebi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species

(2008) Celine A Hayden et al.   BMC GENOMICS

Effects on Translation Pausing of Alterations in Protein and RNA Components of the Ribosome Exit Tunnel

(2008) M. G. Lawrence et al.   JOURNAL OF BACTERIOLOGY

Molecular Mechanism of Drug-Dependent Ribosome Stalling

(2008) Nora Vazquez-Laslop et al.   MOLECULAR CELL

uORFs with unusual translational start codons autoregulate expression of eukaryotic ornithine decarboxylase homologs

(2008) I. P. Ivanov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA