An updated version of NPIDB includes new classifications of DNA–protein complexes and their families

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

(2014) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

Re-visiting protein-centric two-tier classification of existing DNA-protein complexes

(2012) Sony Malhotra et al.   BMC BIOINFORMATICS

NPIDB: nucleic acid—protein interaction database

(2012) Dmitry D. Kirsanov et al.   NUCLEIC ACIDS RESEARCH

Bioinformatic Analysis of the Protein/DNA Interface

(2011) Bohdan Schneider et al.   BIOPHYSICAL JOURNAL

CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures

(2011) C. Blanchet et al.   NUCLEIC ACIDS RESEARCH

Origins of Specificity in Protein-DNA Recognition

(2010) Remo Rohs et al.   Annual Review of Biochemistry

Comparison of DNA binding across protein superfamilies

(2009) Bruno Contreras-Moreira et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures

(2008) Xiang-Jun Lu et al.   Nature Protocols

Dissection, residue conservation, and structural classification of protein-DNA interfaces

(2008) Sumit Biswas et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Insights into Protein–DNA Interactions through Structure Network Analysis

(2008) R. Sathyapriya et al.   PLoS Computational Biology