In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs

Nonsense-Mediated Decay Serves as a General Viral Restriction Mechanism in Plants

(2014) Damien Garcia et al.   Cell Host & Microbe

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

(2014) H. Wang et al.   GENOME RESEARCH

Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs inArabidopsis

(2014) Mengji Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants

(2013) Ana Beatriz Moreno et al.   NUCLEIC ACIDS RESEARCH

Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis

(2012) Virginie Jouannet et al.   EMBO JOURNAL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Erratum: Regulation of cytoplasmic mRNA decay

(2012) Daniel R. Schoenberg et al.   NATURE REVIEWS GENETICS

Translation drives mRNA quality control

(2012) Christopher J Shoemaker et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

ArabidopsisMICROTUBULE DESTABILIZING PROTEIN40 Is Involved in Brassinosteroid Regulation of Hypocotyl Elongation

(2012) Xianling Wang et al.   PLANT CELL

The ArabidopsisDCP2gene is required for proper mRNA turnover and prevents transgene silencing in Arabidopsis

(2012) Moritz Thran et al.   PLANT JOURNAL

RDR1 and SGS3, Components of RNA-Mediated Gene Silencing, Are Required for the Regulation of Cuticular Wax Biosynthesis in Developing Inflorescence Stems of Arabidopsis

(2012) P. Lam et al.   PLANT PHYSIOLOGY

The role of decapping proteins in the miRNA accumulation inArabidopsis thaliana

(2012) Kazuki Motomura et al.   RNA Biology

The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA

(2011) A. E. Martinez de Alba et al.   NUCLEIC ACIDS RESEARCH

Live Cell Imaging Reveals Structural Associations between the Actin and Microtubule Cytoskeleton inArabidopsis

(2011) Arun Sampathkumar et al.   PLANT CELL

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Processing bodies and plant development

(2010) Jun Xu et al.   CURRENT OPINION IN PLANT BIOLOGY

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms of deadenylation-dependent decay

(2010) Chyi-Ying A. Chen et al.   Wiley Interdisciplinary Reviews-RNA

Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173

(2009) Felipe F Felippes et al.   EMBO REPORTS

SGS3 and RDR6 interact and colocalize in cytoplasmic SGS3/RDR6-bodies

(2009) Naoyoshi Kumakura et al.   FEBS LETTERS

Arabidopsis Decapping 5 Is Required for mRNA Decapping, P-Body Formation, and Translational Repression during Postembryonic Development

(2009) J. Xu et al.   PLANT CELL

Nonsense-mediated mRNA decay

(2008) Jikai Wen et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

A Silencing Safeguard: Links between RNA Silencing and mRNA Processing in Arabidopsis

(2008) Xuemei Chen   DEVELOPMENTAL CELL

A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development

(2008) Brian D. Gregory et al.   DEVELOPMENTAL CELL

The Dynamics of Mammalian P Body Transport, Assembly, and Disassembly In Vivo

(2008) Adva Aizer et al.   MOLECULAR BIOLOGY OF THE CELL

Plant stress granules and mRNA processing bodies are distinct from heat stress granules

(2008) Christian Weber et al.   PLANT JOURNAL

Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings

(2008) Jessica Marion et al.   PLANT JOURNAL

AGO1-miR173 complex initiates phased siRNA formation in plants

(2008) T. A. Montgomery et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unexpected silencing effects from T-DNA tags in Arabidopsis

(2008) Lucia Daxinger et al.   TRENDS IN PLANT SCIENCE