A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene

Structure of dihydrouridine synthase C (DusC) fromEscherichia coli

(2013) Minghao Chen et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

A new simple method for introducing an unmarked mutation into a large gene of non-competent Gram-negative bacteria by FLP/FRT recombination

(2013) Masahito Ishikawa et al.   BMC MICROBIOLOGY

Transcriptional Profiling of Neisseria meningitidis Interacting with Human Epithelial Cells in a Long-TermIn VitroColonization Model

(2013) Ariann Hey et al.   INFECTION AND IMMUNITY

Proposal for a new class within the phylum Proteobacteria, Acidithiobacillia classis nov., with the type order Acidithiobacillales, and emended description of the class Gammaproteobacteria

(2013) K. P. Williams et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Complete Genome and Phenome of a Community-Acquired Acinetobacter baumannii

(2013) Daniel N. Farrugia et al.   PLoS One

Deletion of TnAbaR23Results in both Expected and Unexpected Antibiogram Changes in a Multidrug-Resistant Acinetobacter baumannii Strain

(2012) Mandira Kochar et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Molecular evolution of dihydrouridine synthases

(2012) Joanna M Kasprzak et al.   BMC BIOINFORMATICS

Structural characteristics of genomic islands associated with GMP synthases as integration hotspot among sequenced microbial genomes

(2012) Lei Song et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

MODOMICS: a database of RNA modification pathways—2013 update

(2012) Magdalena A. Machnicka et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

Genome organization of epidemic Acinetobacter baumannii strains

(2011) Pier Di Nocera et al.   BMC MICROBIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome sequence of the incompatibility group Iγ plasmid R621a: Evolution of IncI plasmids

(2011) Hiroyuki Takahashi et al.   PLASMID

Molecular basis of dihydrouridine formation on tRNA

(2011) F. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic anatomy of Escherichia coli O157:H7 outbreaks

(2011) M. Eppinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel genes associated with biofilm formation of Actinobacillus pleuropneumoniae

(2011) Alexandra Grasteau et al.   VETERINARY MICROBIOLOGY

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

(2010) Ben C Stöver et al.   BMC BIOINFORMATICS

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus

(2010) Jean-Claude Ogier et al.   BMC GENOMICS

XerCD-Mediated Site-Specific Recombination Leads to Loss of the 57-Kilobase Gonococcal Genetic Island

(2010) N. M. Dominguez et al.   JOURNAL OF BACTERIOLOGY

Detecting genomic islands using bioinformatics approaches

(2010) Morgan G. I. Langille et al.   NATURE REVIEWS MICROBIOLOGY

Complete genome sequence of the incompatibility group I1 plasmid R64

(2010) Gen-ichi Sampei et al.   PLASMID

Complete Genome Sequence of the Multiresistant Taxonomic Outlier Pseudomonas aeruginosa PA7

(2010) Paul H. Roy et al.   PLoS One

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5

(2009) Dmitri V Mavrodi et al.   BMC MICROBIOLOGY

A Transcriptional “Scream” Early Response of E. coli Prey to Predatory Invasion by Bdellovibrio

(2009) Carey Lambert et al.   CURRENT MICROBIOLOGY

The genome ofPolaromonas naphthalenivoransstrain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer

(2009) Jane M. Yagi et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic determinants of Pseudomonas aeruginosa biofilm establishment

(2009) M. Musken et al.   MICROBIOLOGY-SGM

The SOS Response Controls Integron Recombination

(2009) E. Guerin et al.   SCIENCE

Genomic islands are dynamic, ancient integrative elements in bacterial evolution

(2009) E. Fidelma Boyd et al.   TRENDS IN MICROBIOLOGY

Whole-Genome Pyrosequencing of an Epidemic Multidrug-Resistant Acinetobacter baumannii Strain Belonging to the European Clone II Group

(2008) M. Iacono et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Complete genome of Phenylobacterium zucineum – a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562

(2008) Yingfeng Luo et al.   BMC GENOMICS

Systematic Identification and Sequence Analysis of the Genomic Islands of the Enteropathogenic Escherichia coli Strain B171-8 by the Combined Use of Whole-Genome PCR Scanning and Fosmid Mapping

(2008) Y. Ogura et al.   JOURNAL OF BACTERIOLOGY

Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances

(2008) Irith Wiegand et al.   Nature Protocols

Dynamics of Pseudomonas aeruginosa genome evolution

(2008) K. Mathee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA