IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences: Figure 1.

The FunFOLD2 server for the prediction of protein–ligand interactions

(2013) Daniel B. Roche et al.   NUCLEIC ACIDS RESEARCH

The ModFOLD4 server for the quality assessment of 3D protein models

(2013) Liam J. McGuffin et al.   NUCLEIC ACIDS RESEARCH

Assessment of the assessment: Evaluation of the model quality estimates in CASP10

(2013) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of protein disorder region predictions in CASP10

(2013) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of ligand binding site predictions in CASP10

(2013) Tiziano Gallo Cassarino et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of template-based protein structure predictions in CASP10

(2013) Yuanpeng J. Huang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Protein Model Portal—a comprehensive resource for protein structure and model information

(2013) Juergen Haas et al.   Database-The Journal of Biological Databases and Curation

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

(2012) Maria T. Buenavista et al.   BIOINFORMATICS

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

(2012) Ian Sillitoe et al.   NUCLEIC ACIDS RESEARCH

BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions

(2012) Jianyi Yang et al.   NUCLEIC ACIDS RESEARCH

FunFOLDQA: A Quality Assessment Tool for Protein-Ligand Binding Site Residue Predictions

(2012) Daniel B. Roche et al.   PLoS One

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

(2011) Y. Yang et al.   BIOINFORMATICS

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

(2011) Daniel B Roche et al.   BMC BIOINFORMATICS

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

(2011) D. B. Roche et al.   NUCLEIC ACIDS RESEARCH

Automated tertiary structure prediction with accurate local model quality assessment using the intfold-ts method

(2011) Liam J. McGuffin et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of model quality predictions in CASP9

(2011) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of ligand-binding residue predictions in CASP9

(2011) Tobias Schmidt et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of disorder predictions in CASP9

(2011) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of template based protein structure predictions in CASP9

(2011) Valerio Mariani et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The binding site distance test score: a robust method for the assessment of predicted protein binding sites

(2010) Daniel B. Roche et al.   BIOINFORMATICS

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments

(2009) L. J. McGuffin et al.   BIOINFORMATICS

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8

(2009) Iakes Ezkurdia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of disorder predictions in CASP8

(2009) Orly Noivirt-Brik et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Intrinsic disorder prediction from the analysis of multiple protein fold recognition models

(2008) Liam J. McGuffin   BIOINFORMATICS