MouseNet v2: a database of gene networks for studying the laboratory mouse and eight other model vertebrates

Network-assisted approaches for human disease research

(2015) Jung Eun Shim et al.   Animal Cells and Systems

Regulation of Smooth Muscle Dystrophin and Synaptopodin 2 Expression by Actin Polymerization and Vascular Injury

(2015) K. M. Turczy ska et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

FlyNet: a versatile network prioritization server for theDrosophilacommunity

(2015) Junha Shin et al.   NUCLEIC ACIDS RESEARCH

PARP12, an Interferon-stimulated Gene Involved in the Control of Protein Translation and Inflammation

(2014) Iain Welsby et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans

(2014) Ara Cho et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders

(2014) Joanna S. Amberger et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction

(2013) Junha Shin et al.   Molecular BioSystems

The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse

(2013) Judith A. Blake et al.   NUCLEIC ACIDS RESEARCH

YeastNet v3: a public database of data-specific and integrated functional gene networks forSaccharomyces cerevisiae

(2013) Hanhae Kim et al.   NUCLEIC ACIDS RESEARCH

JiffyNet: a web-based instant protein network modeler for newly sequenced species

(2013) Eiru Kim et al.   NUCLEIC ACIDS RESEARCH

FunCoup 3.0: database of genome-wide functional coupling networks

(2013) Thomas Schmitt et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

(2013) Sebastian Köhler et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

(2013) Danielle Welter et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data

(2012) Cynthia L. Smith et al.   MAMMALIAN GENOME

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Systematic prediction of gene function in Arabidopsis thaliana using a probabilistic functional gene network

(2011) Sohyun Hwang et al.   Nature Protocols

Comprehensive Analysis of Reproductive ADAMs: Relationship of ADAM4 and ADAM6 with an ADAM Complex Required for Fertilization in Mice1

(2009) Cecil Han et al.   BIOLOGY OF REPRODUCTION

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

(2009) K. D. Pruitt et al.   GENOME RESEARCH

Localization of the calcium-binding protein secretagogin in cone bipolar cells of the mammalian retina

(2009) Theresa Puthussery et al.   JOURNAL OF COMPARATIVE NEUROLOGY

CORUM: the comprehensive resource of mammalian protein complexes—2009

(2009) Andreas Ruepp et al.   NUCLEIC ACIDS RESEARCH

iRefIndex: A consolidated protein interaction database with provenance

(2008) Sabry Razick et al.   BMC BIOINFORMATICS

A Genomewide Functional Network for the Laboratory Mouse

(2008) Yuanfang Guan et al.   PLoS Computational Biology

Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy

(2008) Wan Kim et al.   GENOME BIOLOGY

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

(2008) Lourdes Peña-Castillo et al.   GENOME BIOLOGY