Imputation of genotypes with low-density chips and its effect on reliability of direct genomic values in Dutch Holstein cattle

Imputation of genotypes from low- to high-density genotyping platforms and implications for genomic selection

(2011) D. P. Berry et al.   Animal

Modeling of Identity-by-Descent Processes Along a Chromosome Between Haplotypes and Their Genotyped Ancestors

(2011) Tom Druet et al.   GENETICS

Imputation of missing single nucleotide polymorphism genotypes using a multivariate mixed model framework1

(2011) M. P. L. Calus et al.   JOURNAL OF ANIMAL SCIENCE

Accuracy of direct genomic values derived from imputed single nucleotide polymorphism genotypes in Jersey cattle

(2010) K.A. Weigel et al.   JOURNAL OF DAIRY SCIENCE

Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms

(2010) K.A. Weigel et al.   JOURNAL OF DAIRY SCIENCE

Marker imputation with low-density marker panels in Dutch Holstein cattle

(2010) Z. Zhang et al.   JOURNAL OF DAIRY SCIENCE

Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle

(2010) T. Druet et al.   JOURNAL OF DAIRY SCIENCE

Effect of enlarging the reference population with (un)genotyped animals on the accuracy of genomic selection in dairy cattle

(2010) M. Pszczola et al.   JOURNAL OF DAIRY SCIENCE

Genotype imputation for genome-wide association studies

(2010) Jonathan Marchini et al.   NATURE REVIEWS GENETICS

A New Statistic to Evaluate Imputation Reliability

(2010) Peng Lin et al.   PLoS One

The Relationship between Imputation Error and Statistical Power in Genetic Association Studies in Diverse Populations

(2009) Lucy Huang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The effect of missing marker genotypes on the accuracy of gene-assisted breeding value estimation: a comparison of methods

(2009) H. A. Mulder et al.   Animal

Genomic breeding value prediction: methods and procedures

(2009) M. P. L. Calus   Animal

Genotype Imputation

(2009) Yun Li et al.   Annual Review of Genomics and Human Genetics

A Hidden Markov Model Combining Linkage and Linkage Disequilibrium Information for Haplotype Reconstruction and Quantitative Trait Locus Fine Mapping

(2009) T. Druet et al.   GENETICS

Genomic Selection Using Low-Density Marker Panels

(2009) D. Habier et al.   GENETICS

Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers

(2009) K.A. Weigel et al.   JOURNAL OF DAIRY SCIENCE

Selection of single-nucleotide polymorphisms and quality of genotypes used in genomic evaluation of dairy cattle in the United States and Canada

(2009) G.R. Wiggans et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

Accuracy of Genomic Selection Using Different Methods to Define Haplotypes

(2008) M. P. L. Calus et al.   GENETICS

Missing data imputation and haplotype phase inference for genome-wide association studies

(2008) Sharon R. Browning   HUMAN GENETICS

Accuracy of Prediction of Gene Content in Large Animal Populations and its Use for Candidate Gene Detection and Genetic Evaluation

(2008) N. Gengler et al.   JOURNAL OF DAIRY SCIENCE

Invited Review: Reliability of genomic predictions for North American Holstein bulls

(2008) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE

Highly effective SNP-based association mapping and management of recessive defects in livestock

(2008) Carole Charlier et al.   NATURE GENETICS