Sequestration of CaMKII in dendritic spines in silico

The Role of Type 4 Phosphodiesterases in Generating Microdomains of cAMP: Large Scale Stochastic Simulations

(2010) Rodrigo F. Oliveira et al.   PLoS One

Detailed Simulations of Cell Biology with Smoldyn 2.1

(2010) Steven S. Andrews et al.   PLoS Computational Biology

Diffusion in Cytoplasm: Effects of Excluded Volume Due to Internal Membranes and Cytoskeletal Structures

(2009) Igor L. Novak et al.   BIOPHYSICAL JOURNAL

βCaMKII Regulates Actin Assembly and Structure

(2009) Hugo Sanabria et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dissecting cooperative calmodulin binding to CaM kinase II: a detailed stochastic model

(2009) Michael J. Byrne et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Introducing simulated cellular architecture to the quantitative analysis of fluorescent microscopy

(2009) Mark A. DePristo et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

Coarse-Grained Molecular Simulation of Diffusion and Reaction Kinetics in a Crowded Virtual Cytoplasm

(2008) Douglas Ridgway et al.   BIOPHYSICAL JOURNAL

FERN – a Java framework for stochastic simulation and evaluation of reaction networks

(2008) Florian Erhard et al.   BMC BIOINFORMATICS

A two-state model for Ca2+/CaM-dependent protein kinase II (αCaMKII) in response to persistent Ca2+ stimulation in hippocampal neurons

(2008) Paul A.A. Grant et al.   CELL CALCIUM

Detailed state model of CaMKII activation and autophosphorylation

(2008) Vladan Lučić et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS