Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II

Inversion-based genomic signatures

(2009) Krister M Swenson et al.   BMC BIOINFORMATICS

Multichromosomal median and halving problems under different genomic distances

(2009) Eric Tannier et al.   BMC BIOINFORMATICS

Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution

(2009) Claus Kemkemer et al.   BMC EVOLUTIONARY BIOLOGY

Breakpoint graphs and ancestral genome reconstructions

(2009) M. A. Alekseyev et al.   GENOME RESEARCH

Recovering genome rearrangements in the mammalian phylogeny

(2009) H. Zhao et al.   GENOME RESEARCH

Comparative genomics of protoploid Saccharomycetaceae

(2009) et al.   GENOME RESEARCH

Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures

(2009) Géraldine Jean et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Reconstructing the History of Yeast Genomes

(2009) David Sankoff   PLoS Genetics

Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome

(2009) Jonathan L. Gordon et al.   PLoS Genetics

Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes

(2008) C. Zheng et al.   BIOINFORMATICS

DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications

(2008) Jian Ma et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes

(2008) Cedric Chauve et al.   PLoS Computational Biology

Dynamics of Genome Rearrangement in Bacterial Populations

(2008) Aaron E. Darling et al.   PLoS Genetics