Comprehensive Human Virus Screening Using High-Throughput Sequencing with a User-Friendly Representation of Bioinformatics Analysis: a Pilot Study

AG-NGS: A powerful and user-friendly computing application for the semi-automated preparation of next-generation sequencing libraries using open liquid handling platforms

(2016) Sergio Callejas et al.   BIOTECHNIQUES

Temporal Response of the Human Virome to Immunosuppression and Antiviral Therapy

(2013) Iwijn De Vlaminck et al.   CELL

Next-Generation Whole Genome Sequencing Identifies the Direction of Norovirus Transmission in Linked Patients

(2013) Samit Kundu et al.   CLINICAL INFECTIOUS DISEASES

Viral pathogen discovery

(2013) Charles Y Chiu   CURRENT OPINION IN MICROBIOLOGY

Pathoscope: Species identification and strain attribution with unassembled sequencing data

(2013) O. E. Francis et al.   GENOME RESEARCH

Next-generation sequencing technologies in diagnostic virology

(2013) Luisa Barzon et al.   JOURNAL OF CLINICAL VIROLOGY

The Perils of Pathogen Discovery: Origin of a Novel Parvovirus-Like Hybrid Genome Traced to Nucleic Acid Extraction Spin Columns

(2013) S. N. Naccache et al.   JOURNAL OF VIROLOGY

VirusFinder: Software for Efficient and Accurate Detection of Viruses and Their Integration Sites in Host Genomes through Next Generation Sequencing Data

(2013) Qingguo Wang et al.   PLoS One

A Modified RNA-Seq Approach for Whole Genome Sequencing of RNA Viruses from Faecal and Blood Samples

(2013) Elizabeth M. Batty et al.   PLoS One

Identification of Novel Viruses Using VirusHunter -- an Automated Data Analysis Pipeline

(2013) Guoyan Zhao et al.   PLoS One

The human virome: new tools and concepts

(2013) Marc Lecuit et al.   TRENDS IN MICROBIOLOGY

Identification of a New Cyclovirus in Cerebrospinal Fluid of Patients with Acute Central Nervous System Infections

(2013) L. V. Tan et al.   mBio

Pathogenic Simian Immunodeficiency Virus Infection Is Associated with Expansion of the Enteric Virome

(2012) Scott A. Handley et al.   CELL

Next-generation sequencing technology in clinical virology

(2012) M.R. Capobianchi et al.   CLINICAL MICROBIOLOGY AND INFECTION

Application of next-generation sequencing technologies in virology

(2012) A. D. Radford et al.   JOURNAL OF GENERAL VIROLOGY

Whole-Genome Sequencing of the Akata and Mutu Epstein-Barr Virus Strains

(2012) Z. Lin et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Isolation of a Novel Coronavirus from a Man with Pneumonia in Saudi Arabia

(2012) Ali M. Zaki et al.   NEW ENGLAND JOURNAL OF MEDICINE

Characterization of the Viral Microbiome in Patients with Severe Lower Respiratory Tract Infections, Using Metagenomic Sequencing

(2012) Fredrik Lysholm et al.   PLoS One

Whole Genome Sequencing and Evolutionary Analysis of Human Papillomavirus Type 16 in Central China

(2012) Min Sun et al.   PLoS One

Performance of VIDISCA-454 in Feces-Suspensions and Serum

(2012) Michel de Vries et al.   Viruses-Basel

Metavir: a web server dedicated to virome analysis

(2011) Simon Roux et al.   BIOINFORMATICS

Applications of Next-Generation Sequencing Technologies to Diagnostic Virology

(2011) Luisa Barzon et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Evaluation of High-Throughput Sequencing for Identifying Known and Unknown Viruses in Biological Samples

(2011) Justine Cheval et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A Sensitive Assay for Virus Discovery in Respiratory Clinical Samples

(2011) Michel de Vries et al.   PLoS One

Rhinovirus Genome Variation during Chronic Upper and Lower Respiratory Tract Infections

(2011) Caroline Tapparel et al.   PLoS One

Ultra-deep sequencing for the analysis of viral populations

(2011) Niko Beerenwinkel et al.   Current Opinion in Virology

Metagenomic Analysis of Fever, Thrombocytopenia and Leukopenia Syndrome (FTLS) in Henan Province, China: Discovery of a New Bunyavirus

(2011) Bianli Xu et al.   PLoS Pathogens

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Rhinovirus Genome Evolution during Experimental Human Infection

(2010) Samuel Cordey et al.   PLoS One

Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism

(2010) J Nikolaj Dybowski et al.   AIDS Research and Therapy

Use of Massively Parallel Ultradeep Pyrosequencing To Characterize the Genetic Diversity of Hepatitis B Virus in Drug-Resistant and Drug-Naive Patients and To Detect Minor Variants in Reverse Transcriptase and Hepatitis B S Antigen

(2008) M. Solmone et al.   JOURNAL OF VIROLOGY

A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases

(2008) Gustavo Palacios et al.   NEW ENGLAND JOURNAL OF MEDICINE