Whole-Genome Sequencing for High-Resolution Investigation of Methicillin-Resistant Staphylococcus aureus Epidemiology and Genome Plasticity

Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries

(2013) David M Engelthaler et al.   BMC INFECTIOUS DISEASES

Whole-Genome Sequencing Shows That Patient-to-Patient Transmission Rarely Accounts for Acquisition of Staphylococcus aureus in an Intensive Care Unit

(2013) J. R. Price et al.   CLINICAL INFECTIOUS DISEASES

Evolution of Staphylococcus aureus and MRSA during outbreaks

(2013) Jodi A. Lindsay   INFECTION GENETICS AND EVOLUTION

Evolution of methicillin-resistant Staphylococcus aureus towards increasing resistance

(2013) Birgit Strommenger et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

(2013) W. Florian Fricke et al.   NATURE REVIEWS GENETICS

MRSA Transmission on a Neonatal Intensive Care Unit: Epidemiological and Genome-Based Phylogenetic Analyses

(2013) Ulrich Nübel et al.   PLoS One

Molecular Epidemiology of Clostridium difficile at a Medical Center in Taiwan: Persistence of Genetically Clustering of A−B+ Isolates and Increase of A+B+ Isolates

(2013) Ju-Hsin Chia et al.   PLoS One

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Allele-Dependent Differences in Quorum-Sensing Dynamics Result in Variant Expression of Virulence Genes in Staphylococcus aureus

(2012) E. Geisinger et al.   JOURNAL OF BACTERIOLOGY

Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study

(2012) Simon R Harris et al.   LANCET INFECTIOUS DISEASES

De novo assembly and genotyping of variants using colored de Bruijn graphs

(2012) Zamin Iqbal et al.   NATURE GENETICS

Transforming clinical microbiology with bacterial genome sequencing

(2012) Xavier Didelot et al.   NATURE REVIEWS GENETICS

Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

(2012) Claudio U. Köser et al.   NEW ENGLAND JOURNAL OF MEDICINE

Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology

(2012) Claudio U. Köser et al.   PLoS Pathogens

Performance comparison of whole-genome sequencing platforms

(2011) Hugo Y K Lam et al.   NATURE BIOTECHNOLOGY

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

Methicillin-resistant Staphylococcus aureus strain USA300: origin and epidemiology

(2009) F. C. Tenover et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Disseminated Community-Acquired USA300 Methicillin-Resistant Staphylococcus aureus Pyomyositis and Septic Pulmonary Emboli in an Immunocompetent Adult

(2009) Joseph F. Woodward et al.   Surgical Infections