Molecular Studies Neglect Apparently Gram-Negative Populations in the Human Gut Microbiota

Gut bacterial microbiota and obesity

(2013) M. Million et al.   CLINICAL MICROBIOLOGY AND INFECTION

The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics

(2013) G. Dubourg et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment

(2013) Grégory Dubourg et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Deep 16S rRNA metagenomics and quantitative PCR analyses of the premature infant fecal microbiota

(2012) Silvia Arboleya et al.   ANAEROBE

Microbial culturomics: paradigm shift in the human gut microbiome study

(2012) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Editorial

(2012) D. Raoult   CLINICAL MICROBIOLOGY AND INFECTION

Categorization of the gut microbiota: enterotypes or gradients?

(2012) Ian B. Jeffery et al.   NATURE REVIEWS MICROBIOLOGY

Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome

(2012) Sanqing Yuan et al.   PLoS One

Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities

(2012) Juan M. Gonzalez et al.   PLoS One

The Cervical Microbiome over 7 Years and a Comparison of Methodologies for Its Characterization

(2012) Benjamin C. Smith et al.   PLoS One

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Human Gut Microbiota: Repertoire and Variations

(2012) Jean-Christophe Lagier et al.   Frontiers in Cellular and Infection Microbiology

Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples

(2011) Bartholomeus van den Bogert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the Gut Microbiotas of Healthy Adult Twins Living in South Korea and the United States

(2011) Sunghee Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The relationship between gut microbiota and weight gain in humans

(2011) Emmanouil Angelakis et al.   Future Microbiology

Reductionistic and Holistic Science

(2011) Ferric C. Fang et al.   INFECTION AND IMMUNITY

Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii

(2011) M Million et al.   INTERNATIONAL JOURNAL OF OBESITY

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

DNA-Based Faecal Dietary Analysis: A Comparison of qPCR and High Throughput Sequencing Approaches

(2011) Dáithí C. Murray et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

(2011) A. L. Goodman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Epidemiology and clinical characteristics of elite controllers

(2011) Jason F Okulicz et al.   Current Opinion in HIV and AIDS

Agreement, Precision, and Accuracy of Epifluorescence Microscopy Methods for Enumeration of Total Bacterial Numbers

(2010) E.-Y. Seo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Specific and Rapid Enumeration of Viable but Nonculturable and Viable-Culturable Gram-Negative Bacteria by Using Flow Cytometry

(2010) M. M. T. Khan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Technology-driven research will dominate hypothesis-driven research: the future of microbiology

(2010) Didier Raoult   Future Microbiology

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

(2010) M. J. Claesson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shaping the Archaeal Cell Envelope

(2010) Albert F. Ellen et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Polymerase chain reaction primers miss half of rRNA microbial diversity

(2009) SunHee Hong et al.   ISME Journal

Gut Microbiota and Its Possible Relationship With Obesity

(2009) John K. DiBaise et al.   MAYO CLINIC PROCEEDINGS

Monitoring Bacterial Community of Human Gut Microbiota Reveals an Increase in Lactobacillus in Obese Patients and Methanogens in Anorexic Patients

(2009) Fabrice Armougom et al.   PLoS One

High Prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae Detected in the Human Gut Using an Improved DNA Detection Protocol

(2009) Bédis Dridi et al.   PLoS One

Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes

(2008) J. A. Frank et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of pyrosequencing and DNA barcodes to monitor variations in Firmicutes and Bacteroidetes communities in the gut microbiota of obese humans

(2008) Fabrice Armougom et al.   BMC GENOMICS

Obesity pandemics and the modification of digestive bacterial flora

(2008) D. Raoult   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Antibiotic-Induced Perturbations of the Intestinal Microbiota Alter Host Susceptibility to Enteric Infection

(2008) I. Sekirov et al.   INFECTION AND IMMUNITY

Electron microscopic examination of uncultured soil-dwelling bacteria

(2008) Kazunobu Amako et al.   MICROBIOLOGY AND IMMUNOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One