期刊
JOURNAL OF CHEMICAL THEORY AND COMPUTATION
卷 7, 期 11, 页码 3625-3634出版社
AMER CHEMICAL SOC
DOI: 10.1021/ct2005209
关键词
-
资金
- Research Corporation [CC6725]
- National Science Foundation [CHE0952337]
- Division Of Chemistry
- Direct For Mathematical & Physical Scien [0952337] Funding Source: National Science Foundation
Recently, Heyden, Lin, and Truhlar (J. Phys. Chem. B 2007, 111, 2231-2241) formularized the adaptive-partitioning schemes for quantum mechanical and molecular mechanical (QM/MM) molecular dynamics simulations. The adaptive-partitioning schemes permit on-the-fly reclassification of atoms/groups as part of the QM or MM subsystems during dynamics simulations. Test simulations of argon atoms in a periodic box with dual-level MM potentials in the microcanonical ensemble demonstrated that the adaptive-partitioning schemes conserved energy and momentum, which is critical to ensure correct sampling of configuration spaces of desired ensembles. In this work, we reported the extension of the adaptive-partitioning schemes to deal with groups that are molecular fragments. The newly developed adaptive-partitioning redistributed charge scheme and adaptive-partitioning redistributed charge and dipole schemes allow on-the-fly relocation of the QM/MM boundaries that cut through covalent bonds during dynamics simulations. Test QM/MM simulations with a variety of QM levels of theory in the microcanonical ensembles demonstrated that the new schemes conserve energy and momentum.
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据