Article
Multidisciplinary Sciences
Yusuke Nakakuki, Takashi Hirose, Hikaru Sotome, Min Gao, Daiki Shimizu, Ruiji Li, Jun-Ya Hasegawa, Hiroshi Miyasaka, Kenji Matsuda
Summary: Helically twisted conductive nanocarbon materials are suitable for optoelectronic and electromagnetic molecular devices on the nanometer scale, showing a large effective conjugation length and ultrafast decay dynamics. The extended π-helicenes achieved a large effective conjugation length through helical fusion, leading to an absorption edge in the near-infrared region.
NATURE COMMUNICATIONS
(2022)
Article
Chemistry, Multidisciplinary
Xiushang Xu, Amy L. Vonder Haar, Rengo Yoshioka, Qizheng Zhang, Serhii Vasylevskyi, Andrew J. Musser, Akimitsu Narita
Summary: A benzo[rst]pentaphene derivative, BPP-MeOPA, was synthesized and characterized by NMR and single-crystal X-ray analysis. Investigation of its photophysical properties, including transient absorption spectroscopy, revealed improved absorption and emission features from an S-1 state with excitonic and charge-transfer character by introducing MeOPA groups.
CHEMICAL COMMUNICATIONS
(2023)
Review
Environmental Sciences
Meng Qiao, Weixiao Qi, Huijuan Liu, Jiuhui Qu
Summary: Oxygenated polycyclic aromatic hydrocarbons (OPAHs) have higher concentrations and toxicity in water environments, posing significant ecological risks to surface water ecosystems.
ENVIRONMENT INTERNATIONAL
(2022)
Article
Chemistry, Organic
Yushi Ohno, Shogo Ando, Daisuke Furusho, Ryoyu Hifumi, Yuuya Nagata, Ikuyoshi Tomita, Shinsuke Inagi
Summary: Here, a facile and selective synthesis of cationic azatriphenylene derivatives was achieved through electrochemical intramolecular cyclization, where the key step involves atom-economical C-H pyridination without a transition-metal catalyst or an oxidant. This proposed strategy provides a practical approach for introducing cationic nitrogen (N (+)) into pi-electron systems, thus expanding the molecular design of N (+)-doped polycyclic aromatic hydrocarbons.
Article
Chemistry, Inorganic & Nuclear
Huimin Zhong, Cong Jiang, Jiahui Zou, Guancheng Zhu, Yanyan Huang
Summary: In this study, CeO2-based porous carbonaceous frameworks (CeO2 PCFs) were used as antioxidant nanozymes to scavenge reactive oxygen species and absorb benzo[a]pyrene. CeO2 PCFs exhibited excellent superoxide dismutase-like and catalase-like activity, effectively eliminating superoxide radical, hydroxyl radical, and hydrogen peroxide. The 2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) free radical scavenging assay confirmed the free radical scavenging ability of CeO2 PCFs. Furthermore, CeO2 PCFs with large surface area and porous structure efficiently adsorbed benzo[a]pyrene. The designed CeO2 PCFs can serve as new antioxidant nanozymes for scavenging reactive oxygen species and adsorbing polycyclic aromatic hydrocarbons (PAHs).
INORGANIC CHEMISTRY
(2023)
Article
Multidisciplinary Sciences
Ralf Kaiser, Long Zhao, Wenchao Lu, Musahid Ahmed, Vladislav S. Krasnoukhov, Valeriy N. Azyazov, Alexander M. Mebel
Summary: Polycyclic aromatic hydrocarbons (PAHs), prevalent in deep space and on Earth, can be formed more efficiently through excited state dynamics in the gas phase, challenging the conventional wisdom that PAH formation solely occurs on electronic ground state surfaces. This finding opens up new possibilities for the rapid synthesis of aromatic, multi-ringed structures.
NATURE COMMUNICATIONS
(2022)
Article
Chemistry, Physical
Thomas Liu, Baptiste Carles, Christine Elias, Claire Tonnele, Daniel Medina-Lopez, Akimitsu Narita, Yannick Chassagneux, Christophe Voisin, David Beljonne, Stephane Campidelli, Loic Rondin, Jean-Sebastien Lauret
Summary: In this study, we conducted single-molecule spectroscopy at cryogenic temperatures to investigate the optical properties of graphene quantum dots (GQDs). We found that temperature has an effect on the spectral characteristics of GQDs, and we used density functional theory calculations to explain these observations. Additionally, we discovered that the vibrational features can serve as a unique fingerprint for identifying GQDs.
JOURNAL OF CHEMICAL PHYSICS
(2022)
Review
Environmental Sciences
Jamie M. Dearnley, Charles Killeen, Rebecca L. Davis, Vince P. Palace, Gregg T. Tomy
Summary: This article reviews the metabolism and toxicity of polycyclic aromatic compounds (PACs) in fish and presents various methods for analyzing metabolite-containing bile. Recent environmental monitoring studies demonstrate the utility of this technique in assessing oil spill pollution, establishing baseline exposure, and evaluating pollution in urban waterways.
CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY
(2022)
Article
Chemistry, Physical
Chih-Hao Chin, Tong Zhu, John Zeng Hui Zhang
Summary: The study investigated the reaction mechanism of N(D-2) + C6H6 and the resulting product branching ratios, revealing potential pathways and product distributions.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2021)
Article
Engineering, Environmental
Jiaxing Lu, Jian Zhang, Huijun Xie, Yuming Jing, Mingde Ji, Zhen Hu
Summary: In this study, a novel wastewater treatment process combining sequencing batch reactor, constructed wetland and microalgal membrane photobioreactor (BCM process) was proposed. The process achieved satisfactory removal of polycyclic aromatic hydrocarbons (PAHs) and their substituted derivatives (SPAHs), and significantly reduced bacterial toxicity and genotoxicity. Microalgae played an important role in ensuring water security.
Article
Engineering, Environmental
Zhiyang Lu, Weijun Tian, Surong Zhang, Meile Chu, Jing Zhao, Bingkun Liu, Kun Yang, Huimin Cao, Zhuo Chen
Summary: This study investigated the spatiotemporal distribution, source, and ecological risk of PAHs and SPAHs in surface sediments in Laizhou Bay. The results showed seasonal differences in concentrations of PAHs and SPAHs and a spatial distribution trend of estuary > coast > offshore. Combustion sources, including petroleum, coal, and biomass, were identified as the main contributors to PAHs and SPAHs. The risk level of PAHs was low-to-moderate, while SPAHs posed a moderate-to-high ecological risk.
JOURNAL OF HAZARDOUS MATERIALS
(2023)
Article
Chemistry, Organic
Yan-Ying Wu, Yi-Lin Wu, Cheng-Lan Lin, Hung-Cheng Chen, Yao-Yuan Chuang, Chih-Hsien Chen, Chih-Ming Chou
Summary: A strategy for the synthesis of dibenz-[a,j]-anthracenes (DBAs) from cyclohexa-2,5-diene-1-carboxylic acids is presented. The method involves sequential C-H olefination, cycloaddition, and decarboxylative aromatization, leading to regioselective ring formation and functional group introduction.
Article
Chemistry, Organic
Tomer Weiss, Alexandra Wahab, Alex M. Bronstein, Renana Gershoni-Poranne
Summary: In this study, interpretable deep learning was used to identify the structure-property relationships of polybenzenoid hydrocarbons (PBHs) using a ring-based graph representation. The results showed agreement with conventional organic chemistry knowledge and electronic structure-based analyses, while also revealing new behaviors and influential structural motifs. The effects of linear, angular, and branching motifs on molecular properties were evaluated and compared, and the role of dispersion in mitigating torsional strain in nonplanar PBHs was explored. These findings contribute to a deeper understanding of PBH behavior and provide a foundation for designing new functional PBHs.
JOURNAL OF ORGANIC CHEMISTRY
(2023)
Article
Chemistry, Organic
Komal Mittal, Ashley V. Pham, Amanda G. Davis, Abigail D. Richardson, Clement De Hoe, Ryan T. Dean, Vi Baird, Ashley Ringer McDonald, Derik K. Frantz
Summary: At elevated temperatures, a strained, cyclic meta-quaterphenylene acetylene undergoes an intramolecular cyclization reaction to form benz[e]indeno[1,2,3-hi]acephenanthrylene. This reaction represents a Diels-Alder reaction at the 2-, 1-, 1 '-, and 2 '-positions of a biphenyl derivative, similar to the bay regions of perylene and other periacenes. Kinetics studies reveal that the reaction has a similar energy barrier to a concerted [4 + 2]-cycloaddition.
JOURNAL OF ORGANIC CHEMISTRY
(2023)
Article
Multidisciplinary Sciences
Daniel Medina-Lopez, Thomas Liu, Silvio Osella, Hugo Levy-Falk, Nicolas Rolland, Christine Elias, Gaspard Huber, Pranav Ticku, Loic Rondin, Bruno Jousselme, David Beljonne, Jean-Sebastien Lauret, Stephane Campidelli
Summary: Nanographene materials, particularly bottom-up synthesized graphene quantum dots, hold great potential as single quantum emitters. The solubility of the starting materials is a key parameter for efficient purification and to fully exploit their properties. Highly soluble and easily processable rod-shaped graphene quantum dots with high fluorescence quantum yields up to 94% were synthesized, allowing for accurate description of their photophysical properties. The use and characterization of graphene quantum dots is limited by their tendency to form aggregates, but the authors successfully synthesized individualized rod-shaped nanographenes with up to 132 sp(2) carbon atoms, enabling precise description of their intrinsic photophysical properties.
NATURE COMMUNICATIONS
(2023)
Letter
Chemistry, Multidisciplinary
Marcos Casanova-Paez, Lars Goerigk
Summary: The commentary critiques the results published by Ottochian et al. in J. Comput Chem., pointing out oversights in their research and demonstrating how these errors can be corrected by utilizing the latest long-range corrected DHDFAs.
JOURNAL OF COMPUTATIONAL CHEMISTRY
(2021)
Article
Chemistry, Physical
Nisha Mehta, Thomas Fellowes, Jonathan M. White, Lars Goerigk
Summary: The study introduces the CHAL336 benchmark set for evaluating chalcogen-bonding interactions and highlights the importance of double-hybrid functionals. It emphasizes the need for dispersion corrections and advises against using popular B3LYP and MP2 methods.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION
(2021)
Article
Chemistry, Physical
Asim Najibi, Marcos Casanova-Paez, Lars Goerigk
Summary: The study investigated the effects of range separation of exchange energy on electronic ground-state properties for double-hybrid density functionals (DHDFs), observing that specific range-separated functionals can sometimes outperform their global counterparts, but range separation alone does not guarantee overall improved results. It was also noted that BLYP-based functionals generally perform better than PBE-based functionals.
JOURNAL OF PHYSICAL CHEMISTRY A
(2021)
Article
Chemistry, Inorganic & Nuclear
Jett T. Janetzki, F. Zahra M. Zahir, Robert W. Gable, Wasinee Phonsri, Keith S. Murray, Lars Goerigk, Colette Boskovic
Summary: The study has developed a simple computational strategy for accurately predicting T-1/2 values of valence tautomeric complexes, with a focus on the role of diimine ligands in tuning T-1/2 values through pi-acceptance. Experimental data showed an excellent correlation between T-1/2 values for [Co(dbdiox)(dbsq)(N2L)] complexes and the calculated lowest unoccupied molecular orbital energy of the corresponding diimine ligand, with an average error of only 3.7%. This quantitative and simple DFT strategy allows for rapid identification and prediction of transition temperatures for proposed VT complexes.
INORGANIC CHEMISTRY
(2021)
Article
Chemistry, Inorganic & Nuclear
Robert W. Elliott, Ashley L. Sutton, Brendan F. Abrahams, Deanna M. D'Alessandro, Lars Goerigk, Carol Hua, Timothy A. Hudson, Richard Robson, Keith F. White
Summary: This 2D coordination polymer with reversible mechanical motion can open and close pores, making it suitable for actuators and ultrasensitive detectors. The material can absorb various volatile guests, resulting in changes in electronic structure and semiconductor behavior.
INORGANIC CHEMISTRY
(2021)
Article
Chemistry, Physical
Marcos Casanova-Paez, Lars Goerigk
Summary: This study presents new LC double hybrids with SCS/SOS that demonstrate further improvement over previously published results and methods, showing highly efficient and robust performance for vertical excitation energies. Among them, the SCS/SOS-omega PBEPP86 and SCS/SOS-omega B88PP86 functionals are identified as four of the most accurate and robust methods, recommended for future applications.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION
(2021)
Article
Chemistry, Physical
Dominique A. Wappett, Lars Goerigk
Summary: Our study investigates the impact of benchmark level and model system size on enzymatically catalyzed reaction studies. We find that different benchmark reference values can lead to significant differences in study outcomes, and that small representative systems may not accurately assess the applicability of low-level methods for larger biochemical applications.
THEORETICAL CHEMISTRY ACCOUNTS
(2021)
Article
Chemistry, Physical
Dale R. R. Lonsdale, Lars Goerigk
Summary: Density Functional Theory (DFT) is widely used in computational chemistry and physics, but the self-interaction error (SIE) poses challenges to obtaining accurate results. We analyzed the one-electron SIE and replicated delocalization effects for simple geometries. By visualizing the effects, we provide insights for future analysis of the one-electron SIE. Increasing the number of nuclei and changing molecular shape significantly increase the SIE, mainly from the exchange functional and error compensation from the one-electron error. We also found that SIE is present in excited states, which is important for non-empirical DFAs.
JOURNAL OF CHEMICAL PHYSICS
(2023)
Article
Chemistry, Physical
Joshua Van Dijk, Marcos Casanova-Paez, Lars Goerigk
Summary: This work is the first comprehensive study of time-dependent double-hybrid density functionals (DHDFs) for calculating doublet-doublet excitation energies. The results show that certain semi-empirical DHDFs have better performance, especially spin-scaled, range-separated DHDFs paired with the TDA.
ACS PHYSICAL CHEMISTRY AU
(2022)
Article
Chemistry, Multidisciplinary
Manjiri Choudhari, Jingjing Xu, Alasdair McKay, Clement Guerrin, Craig Forsyth, Howard Z. Ma, Lars Goerigk, Richard A. J. O'Hair, Antoine Bonnefont, Laurent Ruhlmann, Stephane Aloise, Chris Ritchie
Summary: The metastable trilacunary heteropolyoxomolybdate and ditopic pyridyl bearing diarylethene self-assemble to form a photo-active molecular capsule through a ligand replacement method. The spatial arrangement of the ligands is determined by the surface chemistry of the molecular metal oxide precursor. The study also discovers a photochemical cascade involving rapid photoinduced ring closure and electron transfer.
Article
Chemistry, Multidisciplinary
Amy C. Hancock, Lars Goerigk
Summary: Excimers are supramolecular systems whose binding strength is influenced by various factors, making it challenging for computational methods, especially Time-Dependent Density Functional Theory. There are ongoing challenges in adequately treating the intricacies of excimer binding, particularly in dealing with dispersion interactions. Current TD-DFT methods face limitations in describing charge transfer, exciton coupling, and London dispersion, and the lack of appropriate dispersion corrections for excited states hinders the applicability of these methods.
Article
Chemistry, Multidisciplinary
Nisha Mehta, Lars Goerigk
Summary: The study evaluates the applicability of geometric counterpoise correction (gCP) in double-hybrid density functional calculations, showing improvement over conventional methods in terms of noncovalent interactions. The approach is trained and compared against Boys and Bernardi counterpoise correction, presenting a more balanced alternative with reparametrised corrections. Benchmarking results demonstrate the effectiveness of the gCP-corrected method, particularly in intramolecular noncovalent interactions.
AUSTRALIAN JOURNAL OF CHEMISTRY
(2021)
Article
Chemistry, Physical
Siobhan J. Bradley, Ming Chi, Jonathan M. White, Christopher R. Hall, Lars Goerigk, Trevor A. Smith, Kenneth P. Ghiggino
Summary: The study found that the charge-separated state in DPP derivatives is an important intermediate, which requires suitably aligned dimers for its formation. This serves as an alternative relaxation pathway for the excitation energy.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2021)
Article
Chemistry, Multidisciplinary
Marcos Casanova-Paez, Lars Goerigk
Summary: This study points out oversights in the analysis of intermolecular CT excitations by Ottochian et al., and demonstrates significant improvements in the latest long-range corrected DHDFAs compared to global DHDFAs.
JOURNAL OF COMPUTATIONAL CHEMISTRY
(2021)
Article
Chemistry, Multidisciplinary
Lars Goerigk, Marcos Casanova-Paez
Summary: This account provides a detailed review of time-dependent double-hybrid density functionals, showing their superiority in reproducing exciton-coupled absorption spectra for a variety of electronic excitations in organic molecules compared to conventional TD-DFT methods. While there is still room for improvement and further development, the latest advancements in this field have shown unprecedented robustness. Encouraging users to adjust their computational protocols to these new methods will provide more real-life testing and scenarios.
AUSTRALIAN JOURNAL OF CHEMISTRY
(2021)