Article
Chemistry, Multidisciplinary
Pilar Sanchez-Andrada, Angel Vidal-Vidal, Tania Prieto, Jose Elguero, Ibon Alkorta, Marta Marin-Luna
Summary: The alkylammonium cation affinities and proton transfer processes of 64 nitrogen-containing organobases in the gas phase were calculated using DFT methods. Guanidine bases exhibit the highest proton transfer values while cis-2,2'-biimidazole shows the largest affinity towards alkylammonium cations. Experimental and theoretical data are in agreement, indicating that the propensity of an organobase for the proton transfer process is linearly correlated with its proton affinity.
Article
Chemistry, Physical
Yan Wang, Zihan Xia, Hui Ding, Ziwei Fan, Hui Guo, Peng Sun, Zhongfang Li
Summary: A cross-linkable proton conductor SHBPBI was synthesized by sulfonating hyperbranched polybenzimidazole. A high-temperature proton exchange membrane was prepared with excellent thermal stability and proton conductivity. The composite membrane showed potential applications in proton exchange membrane fuel cells and direct methanol fuel cells due to its good performance in proton conduction, durability, and low leaching rate.
ACS APPLIED ENERGY MATERIALS
(2022)
Article
Chemistry, Organic
A. S. Gazizov, E. A. Kuznetsova, A. Z. Kamaletdinov, A. V. Smolobochkin, O. A. Lodochnikova, D. P. Gerasimova, A. R. Burilov, M. A. Pudovik
Summary: Electron-donating groups enhance nucleophilicity of neighboring double bonds or cross-conjugated π-systems. However, we found that in the case of imidazolin-2-ones, the nucleophilicity of the double bond decreases upon introduction of an electron-donating group. This unexpected effect is due to the stronger interaction of the substituent with a carbonyl group.
ORGANIC CHEMISTRY FRONTIERS
(2023)
Article
Chemistry, Multidisciplinary
Haibo He, Youliang Zhu, Tingting Li, Shihao Song, Liang Zhai, Xiang Li, Lixin Wu, Haolong Li
Summary: This study reports the robust assembly of polyethylene glycol grafted polyoxometalate amphiphile (GSiW(11)) into the ionic nanophases of Nafion, which enhances the overall performance of Nafion. GSiW(11) can coassemble with Nafion through multiple supramolecular interactions, increasing the proton content and forming a wide channel for proton transport. Additionally, GSiW(11) reinforces the Nafion ionic nanophase by noncovalent cross-linking. The hybrid PEMs exhibit multiple enhancements in proton conductivity, tensile strength, and fuel cell power density compared to pure Nafion.
Article
Environmental Sciences
Shan Wang, Leonardo C. Ruspini, Pal-Eric Oren, Stefanie Van Offenwert, Tom Bultreys
Summary: Image-based pore-scale modeling is an important method for studying multiphase flow in permeable rocks. However, the wide distribution of pore sizes in many rocks cannot be resolved in a single image. Recent research has incorporated sub-voxel porosity maps and introduced a baseline sub-rock typing method to reduce uncertainty in the models.
WATER RESOURCES RESEARCH
(2022)
Article
Engineering, Biomedical
A. Lourenco, N. Lee, F. Charlwood, J. Lambert, J. A. Vera-Sanchez, M. Hussein, D. Shipley, F. Romano, M. Lowe, M. Clarke, S. Lorentini, A. Mazal, J. Pettingell, H. Palmans, R. Thomas
Summary: A portable primary standard level graphite calorimeter was used to directly measure the dose in clinical pencil beam scanning proton beams. The study was conducted at four clinical proton therapy facilities and correction factors were applied to account for impurities and vacuum gaps. The absorbed dose to water determined with the calorimeter was compared to ionisation chambers calibrated in Co-60, and the overall uncertainty was reduced to 0.9% (k = 1).
PHYSICS IN MEDICINE AND BIOLOGY
(2023)
Article
Multidisciplinary Sciences
Johanne Mbianda, May Bakail, Christophe Andre, Gwenaelle Moal, Marie E. Perrin, Guillaume Pinna, Raphael Guerois, Francois Becher, Pierre Legrand, Seydou Traore, Celine Douat, Gilles Guichard, Francoise Ochsenbein
Summary: The study demonstrates that the structural plasticity of foldamer backbone is crucial for optimal interaction with protein surface. By designing a foldamer/peptide hybrid inhibitor using oligoureas as α-helix mimics, effective inhibition of the key regulator of chromatin dynamics, histone chaperone ASF1, was achieved. Additionally, the ASF1 ligands with nonpeptide oligourea segments showed significantly improved resistance to proteolysis in human plasma compared to alpha-helical peptides.
Article
Chemistry, Multidisciplinary
Xiangquan Qin, Yiping Jiang, Fuquan Yao, Jie Chen, Fanhui Kong, Panxia Zhao, Longyi Jin, Zhiqi Cong
Summary: In this study, artificial metalloenzymes (ArMs) were constructed by optimizing the structure of dual-functional small molecules (DFSMs) to enhance their binding affinity with P450 enzymes. This strategy successfully resulted in the formation of P450BM3-based peroxygenases with high catalytic activity and promiscuity. The use of editable organic cofactors as co-catalytic centers allows for a low load requirement and widens the substrate range for peroxygenase reactions.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2023)
Article
Marine & Freshwater Biology
Paul H. Hutton, Sujoy B. Roy
Summary: This study evaluates the applicability of PSS-78 in measuring salinity across the San Francisco Estuary, where salinity is influenced by a mixture of seawater, riverine inflows, and agricultural return flows. The study finds that PSS-78 is valid in waters dominated by seawater intrusion and the Sacramento River, but underestimates salinity in waters influenced by the San Joaquin River and agricultural return flows. Therefore, the study suggests appropriate corrections to PSS-78 for accurate salinity estimation in these drainage-influenced waters.
ESTUARINE COASTAL AND SHELF SCIENCE
(2023)
Article
Biophysics
Monika R. VanGordon, Lindsey A. Prignano, Robert E. Dempski, Steven W. Rick, Susan B. Rempe
Summary: Channelrhodopsins (ChR) are light-sensitive cation channels used in optogenetics to control genetically modified cells. Mutations in ChRs can affect pore kinetics, and atomistic simulations show that factors like the presence of 13-cis retinal and specific hydrogen bond interactions play a role in channel opening and hydration in key gating regions. This study also reveals that C1C2 and its mutants behave uniquely compared to other ChR variants, with specific residues like E129 and N297 playing important roles in channel gating.
BIOPHYSICAL JOURNAL
(2021)
Article
Chemistry, Physical
Nabil Al-Zaqri, T. Pooventhiran, Fahad A. Alharthi, Utsab Bhattacharyya, Renjith Thomas
Summary: The study suggests that selpercatinib may act as an ionophore, effectively transporting active zinc ions into cells, thereby preventing the proliferation of the virus inside the cells.
JOURNAL OF MOLECULAR LIQUIDS
(2021)
Article
Chemistry, Multidisciplinary
Jake I. Gold, Jonathan K. Sheavly, Nanqi Bao, Huaizhe Yu, Juriti Rajbangshi, James J. Schauer, Victor M. Zavala, Nicholas L. Abbott, Reid C. Van Lehn, Manos Mavrikakis
Summary: Computational chemistry calculations are widely used in the atom-scale design and understanding of interfaces of liquid crystal mixtures. A combination of density functional theory calculations and classical molecular dynamics simulations allows for predicting the interfacial composition and organization of a binary liquid crystal mixture and studying its evolution into a uniform orientation inside the liquid crystal.
Article
Biotechnology & Applied Microbiology
Lele Yang, Lifang Cui, Shumin Ma, Qingqing Zuo, Qilai Huang
Summary: This study developed an affinity cell sorting system for efficient enrichment of gene transfer-positive cells, which holds great potential in gene research and therapy.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
(2022)
Article
Astronomy & Astrophysics
I. Y. Vasko, K. Alimov, T. Phan, S. D. Bale, F. S. Mozer, A. Artemyev
Summary: In this study, we analyzed proton kinetic-scale current sheets in the solar wind and found that smaller-scale current sheets have higher current density, but do not exceed the drift between ions and electrons of local Alven speed. This observation holds in normalized units.
ASTROPHYSICAL JOURNAL LETTERS
(2022)
Article
Engineering, Biomedical
Hong Qi Tan, Kah Seng Lew, Calvin Wei Yang Koh, Andrew Wibawa, Ping Lin Yeap, Zubin Master, James Cheow Lei Lee, Chris J. Beltran, Sung Yong Park, Keith M. Furutani
Summary: This article presents a safe method for measuring dispersion in the clinic and finds that dispersion is the cause of dose fluctuation in absolute dosimetry measurement.
PHYSICS IN MEDICINE AND BIOLOGY
(2023)
Article
Chemistry, Physical
Dora Papp, Viktor Tajti, Gustavo Avila, Edit Matyus, Gabor Czako
Summary: The automated development of a new ab initio full-dimensional potential energy surface (PES) for the CH4 · F- complex using the Robosurfer program package is reported. The new potential provides a near-spectroscopic quality description over a broad configuration range, including the dissociation and vibrations of methane. Full-dimensional (12D) variational vibrational computations using the new PES show the presence of tunnelling splittings larger than 0.1 cm(-1) below the top of the interconversion barrier of the complex's four equivalent minima.
Article
Chemistry, Multidisciplinary
Edit Matyus, Alberto Martin Santa Daria, Gustavo Avila
Summary: Molecular rotation, vibration, internal rotation, isomerization, tunneling, and other molecular motions play important roles in chemical processes. Understanding and describing these motions are challenging due to their quantum nature and complex potential energy surfaces. This article reviews the methodology for studying quantum nuclear motion, identifies current challenges in solving the nuclear Schrodinger equation, and presents solution strategies. Computational results and analysis are provided for selected numerical examples.
CHEMICAL COMMUNICATIONS
(2023)
Article
Chemistry, Physical
Peter Jeszenszki, Edit Matyus
Summary: This study calculates the triplet contribution to various atomic and molecular states using double-group symmetry and variational solution of the no-pair Dirac-Coulomb-Breit equation. The energies are converged with high precision, and the triplet sector contribution to the variational energy is found to be consistent with the perturbation theory result.
JOURNAL OF CHEMICAL PHYSICS
(2023)
Article
Chemistry, Physical
Iren Simko, Csaba Fabri, Attila G. Csaszar
Summary: Experimental and computational results have challenged traditional chemical concepts regarding the structure, dynamics, and rovibrational spectra of protonated methane. Theoretical and computational results provide insight into the dynamical structure of CH5+. The findings reveal similarities in the structures of the ground vibrational state and other vibrational states below 200 cm-1, confirming the effective structure of CH5+ as a CH3+ tripod with a H2 unit on top.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION
(2023)
Article
Chemistry, Physical
David Ferenc, Edit Matyus
Summary: A general computational scheme for the Bethe logarithm is developed, allowing routine evaluation of the leading-order QED correction for small polyatomic and polyelectronic molecular systems. The method relies on the Schwartz method and Hylleraas functional minimization. The implementation ensures positive definiteness of the functional for electronically excited states.
JOURNAL OF PHYSICAL CHEMISTRY A
(2023)
Article
Chemistry, Physical
Eszter Saly, David Ferenc, Edit Matyus
Summary: For rovibronic states corresponding to the B and B' 1 sigma(+)(u) electronic states of the hydrogen molecule, the non-relativistic energy is converged to a high precision with the incorporation of relativistic and higher-order quantum-electrodynamics corrections. The calculated term values agree excellently with the experimental results when referenced to the rovibronic ground state. The study also reports and discusses results for other rovibronic states related to different electronic states.
Article
Chemistry, Multidisciplinary
Iren Simko, Christoph Schran, Fabien Brieuc, Csaba Fabri, Oskar Asvany, Stephan Schlemmer, Dominik Marx, Attila G. Csaszar
Summary: This work discusses the emergence of quantum nuclear delocalization and its rovibrational fingerprints in the van der Waals complex HHe3+. The results reveal that during the vibrations of the molecule, the solvating He is not restricted to be in a certain plane, but freely orbits the central proton, forming a three-dimensional torus.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2023)
Article
Chemistry, Physical
Jamel Salem, Roland Tobias, Attila G. Csaszar, Muneerah Mogren Al-Mogren, Nejm-Edine Jaidane, Majdi Hochlaf
Summary: This study presents a computational analysis of line-broadening effects in the CO2 & sdot; Ar van der Waals complex. The accurate intermonomer potential energy surface (PES) is employed to calculate collisional broadening coefficients for CO2 rovibrational lines perturbed by Ar. The results are in good agreement with experimental values and offer new insights into the temperature-dependent Ar-broadening coefficients in the 01101 <- 00001 band of CO2.
Article
Chemistry, Physical
Emil Vogt, Iren Simko, Attila G. Csaszar, Henrik G. Kjaergaard
Summary: This study calculated the intramolecular vibrational transition wavenumbers and intensities in different vibrational regions of the water dimer's spectrum, and computed the rotational-vibrational spectrum in the Delta v(OH) = 2 region. The calculated spectrum was obtained by combining results from a full-dimensional vibrational model and a reduced-dimensional vibrational-rotational-tunneling model. The Delta v(OH) = 2 spectral region is characterized by multiple vibrational-rotational-tunneling sub-bands, which contribute to the rich features in the spectrum.
JOURNAL OF PHYSICAL CHEMISTRY A
(2023)
Article
Chemistry, Physical
Antonio Castrillo, Eugenio Fasci, Tibor Furtenbacher, Vittorio D'Agostino, Muhammad A. Khan, Stefania Gravina, Livio Gianfrani, Attila G. Csaszar
Summary: Lamb dips of (C2H2)-C-12 in the P, Q, and R branches of the ?(1) + ?(3) + ?(1)(4) vibrational band were measured using an upgraded comb-calibrated frequency-stabilized cavity ring-down spectrometer. The line-center positions of the measured lines have an average uncertainty of 15 kHz with a 2-s confidence level. A line list called TenkHz was generated based on the newly assembled empirical energy levels of para- and ortho-(C2H2)-C-12, including 35 intense lines missing in the HITRAN2020 database.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2023)
Article
Chemistry, Physical
Cangtao Yin, Gabor Czako
Summary: We investigated the mode-specificity of the HI + C2H5 reaction by exciting four different vibrational modes of the reactants and studying the effect on reactivity, mechanism, and energy transfer. Exciting the HI-stretching mode strongly promotes both reaction pathways, while excitations on C2H5 surprisingly inhibit the dominant H-abstraction pathway. The dominance of direct stripping mechanism and direct rebound mechanism is observed in H-abstraction and I-abstraction, respectively.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2023)
Article
Chemistry, Physical
Andras B. Nacsa, Mate Kigyosi, Gabor Czako
Summary: The potential energy surfaces of serine and its protonated counterparts were investigated to determine the structures of the minima. Various calculations were performed to determine the relative energies, geometries, and vibrational frequencies. Additionally, thermodynamic values, such as proton affinity and gas-phase basicity, were calculated considering different protonation sites.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2023)
Review
Chemistry, Physical
Edit Matyus, David Ferenc, Peter Jeszenszki, Adam Margocsy
Summary: Interactions in atomic and molecular systems are primarily controlled by electromagnetic forces, necessitating a theoretical framework within the quantum regime. The combination of quantum mechanics and electromagnetism, known as quantum electrodynamics, is established as a scattering theory. Efficient computation of bound states in atoms and molecules is crucial, and nonrelativistic quantum mechanics provides methodologies for solving wave equations with systematic approximations. This article reviews the computational quantum electrodynamics framework for atomic and molecular matter, including the Bethe-Salpeter wave equation, relativistic wave equation, and their applications in precision spectroscopy.
ACS PHYSICAL CHEMISTRY AU
(2023)
Article
Chemistry, Physical
Boldizsar Ballay, Timea Szucs, Dora Papp, Gabor Czako
Summary: In this study, we use advanced electronic structure methods to determine the energies and geometries of relevant key points in the X- + PH2Y reactions. We analyze the main reaction routes and product channels, taking into account various corrections to obtain accurate results.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2023)
Article
Chemistry, Physical
Cangtao Yin, Gabor Czako
Summary: The global full-dimensional potential energy surface (PES) for the reaction of the Criegee intermediate, CH2OO, with the NH3 molecule is developed using different ab initio methods. The accuracy of the PES is confirmed by comparing its properties with ab initio data. Quasi-classical trajectory simulations are used to calculate reaction probabilities and cross sections. The study reveals that the maximum impact parameter for reactivity is independent of collision energy, and the reaction probability increases with increasing collision energy for this negative-barrier reaction.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2023)