4.7 Article

Diabatization based on the dipole and quadrupole: The DQ method

期刊

JOURNAL OF CHEMICAL PHYSICS
卷 141, 期 11, 页码 -

出版社

AMER INST PHYSICS
DOI: 10.1063/1.4894472

关键词

-

资金

  1. Scientific Discovery through Advanced Computing (SciDAC) program - U.S. Department of Energy, Office of Science, Basic Energy Sciences and Advanced Scientific Computing Research [DE-SC0008666]

向作者/读者索取更多资源

In this work, we present a method, called the DQ scheme (where D and Q stand for dipole and quadrupole, respectively), for transforming a set of adiabatic electronic states to diabatic states by using the dipole and quadrupole moments to determine the transformation coefficients. It is more broadly applicable than methods based only on the dipole moment; for example, it is not restricted to electron transfer reactions, and it works with any electronic structure method and for molecules with and without symmetry, and it is convenient in not requiring orbital transformations. We illustrate this method by prototype applications to two cases, LiH and phenol, for which we compare the results to those obtained by the fourfold-way diabatization scheme. (C) 2014 AIP Publishing LLC.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Materials Science, Multidisciplinary

Mechanistic Insights into Electrocatalytic Nitrogen Reduction Reaction on the Pd-W Heteronuclear Diatom Supported on C2N Monolayer: Role of H Pre-Adsorption

Zeyun Zhang, Xuefei Xu

Summary: In this study, the eNRR performance of 30 single metal atoms supported on a C2N monolayer (M@C2N) was evaluated using density functional theory calculations and the computational hydrogen electrode model. A new thermodynamically stable Pd-W hetero-metal diatomic catalyst supported on the C2N monolayer (PdW@C2N) was also designed. The results showed that PdW@C2N exhibited excellent performance in catalyzing the eNRR process, with low overpotential, ultra-low NH3 desorption free energy, and high selectivity towards eNRR over hydrogen evolution reaction (HER). Compared to its monomer and homonuclear diatom counterparts, PdW@C2N showed superior eNRR performance. The revealed mechanism suggested that the preferential H adsorption over N-2 on the active site may not hinder the eNRR process, especially in heteronuclear diatom catalysts.

ENERGY & ENVIRONMENTAL MATERIALS (2023)

Article Chemistry, Physical

New Gradient Correction Scheme for Electronically Nonadiabatic Dynamics Involving Multiple Spin States

Yinan Shu, Linyao Zhang, Dihua Wu, Xiye Chen, Shaozeng Sun, Donald G. Truhlar

Summary: It is recommended to use the fully adiabatic basis for trajectory surface hopping (TSH) calculations, where the Hamiltonian is diagonal. Traditional TSH methods for simulating intersystem crossing processes require explicit computation of nonadiabatic coupling vectors (NACs) in the molecular-Coulomb-Hamiltonian (MCH) basis, in order to compute the gradient in the fully adiabatic basis. However, this explicit requirement hinders the advantages of overlap-based and curvature-driven algorithms used for efficient TSH calculations. A new computation scheme called the time-derivative-matrix scheme is proposed to circumvent the need for NACs.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Physical

The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry

Giovanni Li Manni, Ignacio Fdez. Galvan, Ali Alavi, Flavia Aleotti, Francesco Aquilante, Jochen Autschbach, Davide Avagliano, Alberto Baiardi, Jie J. Bao, Stefano Battaglia, Letitia Birnoschi, Alejandro Blanco-Gonzalez, Sergey I. Bokarev, Ria Broer, Roberto Cacciari, Paul B. Calio, Rebecca K. Carlson, Rafael Carvalho Couto, Luis Cerdan, Liviu F. Chibotaru, Nicholas F. Chilton, Jonathan Richard Church, Irene Conti, Sonia Coriani, Juliana Cuellar-Zuquin, Razan E. Daoud, Nike Dattani, Piero Decleva, Coen de Graaf, Mickael G. Delcey, Luca De Vico, Werner Dobrautz, Sijia S. Dong, Rulin Feng, Nicolas Ferre, Michael Filatov (Gulak), Laura Gagliardi, Marco Garavelli, Leticia Gonzalez, Yafu Guan, Meiyuan Guo, Matthew R. Hennefarth, Matthew R. Hermes, Chad E. Hoyer, Miquel Huix-Rotllant, Vishal Kumar Jaiswal, Andy Kaiser, Danil S. Kaliakin, Marjan Khamesian, Daniel S. King, Vladislav Kochetov, Marek Krosnicki, Arpit Arun Kumaar, Ernst D. Larsson, Susi Lehtola, Marie-Bernadette Lepetit, Hans Lischka, Pablo Lopez Rios, Marcus Lundberg, Dongxia Ma, Sebastian Mai, Philipp Marquetand, Isabella C. D. Merritt, Francesco Montorsi, Maximilian Morchen, Artur Nenov, Vu Ha Anh Nguyen, Yoshio Nishimoto, Meagan S. Oakley, Massimo Olivucci, Markus Oppel, Daniele Padula, Riddhish Pandharkar, Quan Manh Phung, Felix Plasser, Gerardo Raggi, Elisa Rebolini, Markus Reiher, Ivan Rivalta, Daniel Roca-Sanjuan, Thies Romig, Arta Anushirwan Safari, Aitor Sanchez-Mansilla, Andrew M. Sand, Igor Schapiro, Thais R. Scott, Javier Segarra-Marti, Francesco Segatta, Dumitru-Claudiu Sergentu, Prachi Sharma, Ron Shepard, Yinan Shu, Jakob K. Staab, Tjerk P. Straatsma, Lasse Kragh Sorensen, Bruno Nunes Cabral Tenorio, Donald G. Truhlar, Liviu Ungur, Morgane Vacher, Valera Veryazov, Torben Arne Voss, Oskar Weser, Dihua Wu, Xuchun Yang, David Yarkony, Chen Zhou, J. Patrick Zobel, Roland Lindh

Summary: This article describes the developments of the open-source OpenMolcas chemistry software environment since spring 2020, focusing on the novel functionalities in the stable branch and interfaces with other packages. These developments cover a wide range of topics in computational chemistry and provide an overview of the chemical phenomena and processes that OpenMolcas can address.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Physical

Direct Nonadiabatic Dynamics of Ammonia with Curvature-Driven Coherent Switching with Decay of Mixing and with Fewest Switches with Time Uncertainty: An Illustration of Population Leaking in Trajectory Surface Hopping Due to Frustrated Hops

Xiaorui Zhao, Yinan Shu, Linyao Zhang, Xuefei Xu, Donald G. Truhlar

Summary: Mixed quantum-classical nonadiabatic dynamics is widely used for simulating molecular dynamics involving multiple electronic states. Trajectory surface hopping (TSH) and self-consistent potential (SCP) methods are the two main categories of such dynamics algorithms. This work illustrates an example of severe population leaking in TSH, which is caused by frustrated hops and long-time simulations driving the excited-state population towards zero over time. The leaking can be partially alleviated by the fewest switches with time uncertainty (TSH) algorithm, but not completely eliminated.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Physical

Linearized Pair-Density Functional Theory

Matthew R. Hennefarth, Matthew R. Hermes, Donald G. Truhlar, Laura Gagliardi

Summary: Multiconfigurationpair-density functional theory (MC-PDFT) is a successful method for computing ground- and excited-state energies. However, it can lead to inaccurate potential energy surfaces near avoided crossings and conical intersections. In order to overcome this limitation and accurately describe molecular dynamics and Jahn-Teller instabilities, a new method called linearized PDFT (L-PDFT) is proposed. L-PDFT effectively recovers the correct potential energy surface topology and outperforms previous methods for predicting vertical excitations.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Physical

Electronic Excitation of ortho-Fluorothiophenol

Jiaxin Ning, Donald G. Truhlar

Summary: Using theoretical computations, we studied the photodissociation process of ortho-Fluorothiophenol (o-FTP). We found that the introduction of a fluorine atom in o-FTP leads to the formation of a hydrogen bond with the hydrogen atom of the SH group, which is not commonly observed in other pi sigma* processes. Theoretical calculations are important for studying these reactions as they provide a deeper understanding of the processes compared to current spectroscopic methods.

JOURNAL OF PHYSICAL CHEMISTRY A (2023)

Article Chemistry, Physical

Dipole Moments and Transition Dipole Moments Calculated by Pair- Density Functional Theory with State Interaction

Aleksandr O. Lykhin, Moritz K. A. Baumgarten, Donald G. Truhlar, Laura Gagliardi

Summary: We develop response-function algorithms for dipole moments and transition dipole moments for compressed multistate pair-density functional theory (CMS-PDFT). We use the method of undetermined Lagrange multipliers to derive analytical expressions and validate them using numerical differentiation. We show that CMS-PDFT has good accuracy for ground-state and excited-state dipole moments, and can provide correct behavior for the dipole moment curves in the vicinity of conical intersections, which opens the door to molecular dynamic simulations in strong electric fields and the discovery of chemical reactions that can be controlled by an oriented external electric field upon photoexcitation of the reactants.

JOURNAL OF PHYSICAL CHEMISTRY A (2023)

Article Computer Science, Interdisciplinary Applications

MSTor 2023: A new version of the computer code for multistructural torsional anharmonicity, now with automatic torsional identification using redundant internal coordinates

Wenqi Chen, Jingjing Zheng, Junwei Lucas Bao, Donald G. Truhlar, Xuefei Xu

Summary: The MSTor program is a computer program that calculates partition functions and thermodynamic functions of complex gas-phase molecules with multiple torsions. It can use multi-structural approximation with torsional anharmonicity (MS-T) based on either a coupled torsional potential or an uncoupled torsional potential. The program also includes eight utility codes for generating input files and comparison results. The 2023 version of MSTor introduces automatic identification of torsional modes with redundant internal coordinates.

COMPUTER PHYSICS COMMUNICATIONS (2023)

Article Chemistry, Physical

Nonadiabatic Coupling in Trajectory Surface Hopping: Accurate Time Derivative Couplings by the Curvature-Driven Approximation

Xiaorui Zhao, Isabella C. D. Merritt, Ruiqing Lei, Yinan Shu, Denis Jacquemin, Linyao Zhang, Xuefei Xu, Morgane Vacher, Donald G. Truhlar

Summary: This work discusses nonadiabatic TSH dynamics algorithms employing the curvature-driven approximation and overlap-based time derivative couplings, and presents test calculations on six photochemical reactions. The results show good agreement between the curvature-driven algorithms and overlap-based algorithms.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Physical

ChemPotPy: A Python Library for Analytic Representations of Potential Energy Surfaces and Diabatic Potential Energy Matrices

Yinan Shu, Zoltan Varga, Dayou Zhang, Donald G. Truhlar

Summary: Constructing analytic representations of potential energy surfaces is difficult, especially when coupled potential energy surfaces and their nonadiabatic couplings are involved. In order to facilitate the use of developed potentials, we have created ChemPotPy, a user-friendly library for analytic representation of single-state and multistate potential energy surfaces and couplings.

JOURNAL OF PHYSICAL CHEMISTRY A (2023)

Article Chemistry, Physical

Barrier Heights for Diels-Alder Transition States Leading to Pentacyclic Adducts: A Benchmark Study of Crowded, Strained Transition States of Large Molecules

Maryam Mansoori Kermani, Hanwei Li, Alistar Ottochian, Orlando Crescenzi, Benjamin G. Janesko, Giovanni Scalmani, Michael J. Frisch, Ilaria Ciofini, Carlo Adamo, Donald G. Truhlar

Summary: Theoretical characterization of reactions of complex molecules requires accurate determination of the relative energies of intermediates and transition states. In this study, the DLPNO-CCSD(T) method was employed to provide benchmark values for Diels-Alder transition states leading to strained pentacyclic adducts. Various wave function and density functional methods were compared for their prediction of absolute and relative barrier heights. The results show that only a few density functionals can satisfactorily predict absolute barrier heights, while relative barrier heights are more accurate. The findings of this study can guide the selection of density functionals for future studies on crowded, strained transition states of large molecules.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2023)

Article Chemistry, Physical

Mechanistic insights into trisulfur radical generation in lithium-sulfur batteries

Xu Han, Xuefei Xu

Summary: Trisulfur radicals are important reaction intermediates in the liquid electrolytes of lithium-sulfur batteries. Understanding their generation mechanism can lead to new strategies for improving sulfur conversion kinetics.

JOURNAL OF MATERIALS CHEMISTRY A (2023)

Article Chemistry, Physical

Decoherence and Its Role in Electronically Nonadiabatic Dynamics

Yinan Shu, Donald G. Truhlar

Summary: Decoherence refers to the phenomenon where the density matrix of a subsystem evolves into a statistical ensemble of states instead of a coherent combination of pure-state wave functions. In molecular processes involving changes in electronic states and nuclear coordinates, the interaction between the electronic and nuclear subsystems leads to decoherence of the electronic subsystem. This paper provides background information on decoherence and discusses its treatment in the coherent switching with decay of mixing algorithm and the trajectory surface hopping method for semiclassical calculations of electronically nonadiabatic processes.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Computer Science, Interdisciplinary Applications

Supervised learning of a chemistry functional with damped dispersion

Yiwei Liu, Cheng Zhang, Zhonghua Liu, Donald G. Truhlar, Ying Wang, Xiao He

Summary: In this study, we optimized a singly hybrid functional called CF22D, which outperforms most existing non-doubly hybrid functionals in terms of accuracy in chemistry. By using a flexible functional form that combines a global hybrid meta-nonseparable gradient approximation with a damped dispersion term, we trained CF22D using a large database and performance-triggered iterative supervised training. The use of a combined database demonstrated CF22D's good performance across various chemical properties and systems.

NATURE COMPUTATIONAL SCIENCE (2023)

Review Chemistry, Physical

Computational quantum chemistry of metal-organic frameworks

Indrani Choudhuri, Jingyun Ye, Donald G. Truhlar

Summary: Metal-organic frameworks (MOFs) have exceptional properties for various functions. Experimental characterization and examination of all potentially useful combinations of MOFs are practically impossible. Computational modeling has become an important tool for understanding the functionalization and mechanisms of MOFs.

CHEMICAL PHYSICS REVIEWS (2023)

暂无数据