Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis

Coarse Grained Normal Mode Analysis vs. Refined Gaussian Network Model for Protein Residue-Level Structural Fluctuations

(2013) Jun-Koo Park et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Multiscale multiphysics and multidomain models—Flexibility and rigidity

(2013) Kelin Xia et al.   JOURNAL OF CHEMICAL PHYSICS

Density-cluster NMA: A new protein decomposition technique for coarse-grained normal mode analysis

(2012) Omar N. A. Demerdash et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

ProDy: Protein Dynamics Inferred from Theory and Experiments

(2011) A. Bakan et al.   BIOINFORMATICS

Algorithm 905

(2010) William I. Thacker et al.   ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE

Microtubule Elasticity: Connecting All-Atom Simulations with Continuum Mechanics

(2010) David Sept et al.   PHYSICAL REVIEW LETTERS

A flexible docking scheme to explore the binding selectivity of PDZ domains

(2010) Z. Nevin Gerek et al.   PROTEIN SCIENCE

Normal mode analysis for proteins

(2008) Lars Skjaerven et al.   JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM