Potential of mean force analysis of the self-association of leucine-rich transmembrane α-helices: Difference between atomistic and coarse-grained simulations
出版年份 2014 全文链接
标题
Potential of mean force analysis of the self-association of leucine-rich transmembrane α-helices: Difference between atomistic and coarse-grained simulations
作者
关键词
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出版物
JOURNAL OF CHEMICAL PHYSICS
Volume 141, Issue 7, Pages 075101
出版商
AIP Publishing
发表日期
2014-08-16
DOI
10.1063/1.4891932
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- The Free Energy Landscape of Dimerization of a Membrane Protein, NanC
- (2014) Thomas A. Dunton et al. PLoS Computational Biology
- Coarse-Graining Methods for Computational Biology
- (2013) Marissa G. Saunders et al. Annual Review of Biophysics
- Molecular Dynamics Simulation Analysis of Membrane Defects and Pore Propensity of Hemifusion Diaphragms
- (2013) Manami Nishizawa et al. BIOPHYSICAL JOURNAL
- Perspective on the Martini model
- (2013) Siewert J. Marrink et al. CHEMICAL SOCIETY REVIEWS
- Free energy of WALP23 dimer association in DMPC, DPPC, and DOPC bilayers
- (2013) Norberto Castillo et al. CHEMISTRY AND PHYSICS OF LIPIDS
- Coarse-grain modelling of protein–protein interactions
- (2013) Marc Baaden et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- A transferable coarse-grained model for diphenylalanine: How to represent an environment driven conformational transition
- (2013) Cahit Dalgicdir et al. JOURNAL OF CHEMICAL PHYSICS
- PRIMO: A Transferable Coarse-Grained Force Field for Proteins
- (2013) Parimal Kar et al. Journal of Chemical Theory and Computation
- Electrostatic-Consistent Coarse-Grained Potentials for Molecular Simulations of Proteins
- (2013) Enrico Spiga et al. Journal of Chemical Theory and Computation
- Multidimensional umbrella sampling and replica-exchange molecular dynamics simulations for structure prediction of transmembrane helix dimers
- (2013) Pai-Chi Li et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Robust Driving Forces for Transmembrane Helix Packing
- (2012) Ayelet Benjamini et al. BIOPHYSICAL JOURNAL
- Improving Internal Peptide Dynamics in the Coarse-Grained MARTINI Model: Toward Large-Scale Simulations of Amyloid- and Elastin-like Peptides
- (2012) Mikyung Seo et al. Journal of Chemical Theory and Computation
- Modeling Protein–Protein Recognition in Solution Using the Coarse-Grained Force Field SCORPION
- (2012) Nathalie Basdevant et al. Journal of Chemical Theory and Computation
- Two Dimensional Window Exchange Umbrella Sampling for Transmembrane Helix Assembly
- (2012) Soohyung Park et al. Journal of Chemical Theory and Computation
- Improved Parameters for the Martini Coarse-Grained Protein Force Field
- (2012) Djurre H. de Jong et al. Journal of Chemical Theory and Computation
- Structural Determinants of the Supramolecular Organization of G Protein-Coupled Receptors in Bilayers
- (2012) Xavier Periole et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- On the binding affinity of macromolecular interactions: daring to ask why proteins interact
- (2012) P. L. Kastritis et al. Journal of the Royal Society Interface
- Characterization of the motion of membrane proteins using high-speed atomic force microscopy
- (2012) Ignacio Casuso et al. Nature Nanotechnology
- Computational studies of membrane proteins: Models and predictions for biological understanding
- (2011) Jie Liang et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Transmembrane domains interactions within the membrane milieu: Principles, advances and challenges
- (2011) Avner Fink et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Transmembrane helix–helix interactions are modulated by the sequence context and by lipid bilayer properties
- (2011) Florian Cymer et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Transmembrane helix dimerization: Beyond the search for sequence motifs
- (2011) Edwin Li et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Transmembrane helices can induce domain formation in crowded model membranes
- (2011) Jan Domański et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Showcasing modern molecular dynamics simulations of membrane proteins through G protein-coupled receptors
- (2011) Jennifer M Johnston et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Membrane protein sequestering by ionic protein–lipid interactions
- (2011) Geert van den Bogaart et al. NATURE
- Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes
- (2011) L. V. Schafer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Self-Association of Models of Transmembrane Domains of ErbB Receptors in a Lipid Bilayer
- (2010) Anupam Prakash et al. BIOPHYSICAL JOURNAL
- Revisiting Hydrophobic Mismatch with Free Energy Simulation Studies of Transmembrane Helix Tilt and Rotation
- (2010) Taehoon Kim et al. BIOPHYSICAL JOURNAL
- Lipid-Modulated Sequence-Specific Association of Glycophorin A in Membranes
- (2010) Lorant Janosi et al. BIOPHYSICAL JOURNAL
- An Iris-Like Mechanism of Pore Dilation in the CorA Magnesium Transport System
- (2010) Nilmadhab Chakrabarti et al. BIOPHYSICAL JOURNAL
- Interpretation of 2H-NMR Experiments on the Orientation of the Transmembrane Helix WALP23 by Computer Simulations
- (2010) Luca Monticelli et al. BIOPHYSICAL JOURNAL
- Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes
- (2010) Durba Sengupta et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Structure elucidation of dimeric transmembrane domains of bitopic proteins
- (2010) Eduard V. Bocharov et al. Cell Adhesion & Migration
- Polarizable Water Model for the Coarse-Grained MARTINI Force Field
- (2010) Semen O. Yesylevskyy et al. PLoS Computational Biology
- Molecular Dynamics Simulations of the Dimerization of Transmembrane α-Helices
- (2009) Emi Psachoulia et al. ACCOUNTS OF CHEMICAL RESEARCH
- Orientation and dynamics of transmembrane peptides: the power of simple models
- (2009) Andrea Holt et al. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
- Multiscale modeling of emergent materials: biological and soft matter
- (2009) Teemu Murtola et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Interaction and conformational dynamics of membrane-spanning protein helices
- (2009) Dieter Langosch et al. PROTEIN SCIENCE
- Association energetics of membrane spanning α-helices
- (2008) K MACKENZIE et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Membrane proteins: molecular dynamics simulations
- (2008) E LINDAHL et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The MARTINI Coarse-Grained Force Field: Extension to Proteins
- (2008) Luca Monticelli et al. Journal of Chemical Theory and Computation
- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
- (2008) Berk Hess et al. Journal of Chemical Theory and Computation
- Fast procedure for reconstruction of full-atom protein models from reduced representations
- (2008) Piotr Rotkiewicz et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Role of Hydrogen Bonding and Helix−Lipid Interactions in Transmembrane Helix Association
- (2008) Jinhyuk Lee et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Transmembrane Helix Tilting: Insights from Calculating the Potential of Mean Force
- (2008) Jinhyuk Lee et al. PHYSICAL REVIEW LETTERS
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