Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models

Slow Unfolded-State Structuring in Acyl-CoA Binding Protein Folding Revealed by Simulation and Experiment

(2012) Vincent A. Voelz et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Peptide Chain Dynamics in Light and Heavy Water: Zooming in on Internal Friction

(2012) Julius C. F. Schulz et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains

(2012) B. G. Wensley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aggregation of  -synuclein is kinetically controlled by intramolecular diffusion

(2012) B. Ahmad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy

(2012) A. Soranno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Localizing internal friction along the reaction coordinate of protein folding by combining ensemble and single-molecule fluorescence spectroscopy

(2012) Alessandro Borgia et al.   Nature Communications

Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: A case study of polymer cyclization

(2011) Ryan R. Cheng et al.   JOURNAL OF CHEMICAL PHYSICS

Energy Landscape Analyses of Disordered Histone Tails Reveal Special Organization of Their Conformational Dynamics

(2011) Davit A. Potoyan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Viscous Friction of Hydrogen-Bonded Matter

(2011) Aykut Erbaş et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Universality in the Timescales of Internal Loop Formation in Unfolded Proteins and Single-Stranded Oligonucleotides

(2010) Ryan R. Cheng et al.   BIOPHYSICAL JOURNAL

Solvent Viscosity and Friction in Protein Folding Dynamics

(2010) Stephen J. Hagen   CURRENT PROTEIN & PEPTIDE SCIENCE

Spatiotemporal correlations in denatured proteins: The dependence of fluorescence resonance energy transfer (FRET)-derived protein reconfiguration times on the location of the FRET probes

(2010) Dmitrii E. Makarov   JOURNAL OF CHEMICAL PHYSICS

Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family

(2010) Beth G. Wensley et al.   NATURE

An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

(2010) A. Reiner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extremely slow intramolecular diffusion in unfolded protein L

(2010) S. A. Waldauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Charge interactions can dominate the dimensions of intrinsically disordered proteins

(2010) S. Muller-Spath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrogen-Bond Driven Loop-Closure Kinetics in Unfolded Polypeptide Chains

(2010) Isabella Daidone et al.   PLoS Computational Biology

The Length and Viscosity Dependence of End-to-End Collision Rates in Single-Stranded DNA

(2009) Takanori Uzawa et al.   BIOPHYSICAL JOURNAL

Kinetics of Contact Formation and End-to-End Distance Distributions of Swollen Disordered Peptides

(2009) Andrea Soranno et al.   BIOPHYSICAL JOURNAL

The transition state transit time of WW domain folding is controlled by energy landscape roughness

(2009) Feng Liu et al.   JOURNAL OF CHEMICAL PHYSICS

Protein dynamics from single-molecule fluorescence intensity correlation functions

(2009) Irina V. Gopich et al.   JOURNAL OF CHEMICAL PHYSICS

How accurate are polymer models in the analysis of Förster resonance energy transfer experiments on proteins?

(2009) Edward P. O’Brien et al.   JOURNAL OF CHEMICAL PHYSICS

The Rate of Intramolecular Loop Formation in DNA and Polypeptides: The Absence of the Diffusion-Controlled Limit and Fractional Power-Law Viscosity Dependence

(2009) Ryan R. Cheng et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Protein Folding, Protein Collapse, and Tanford’s Transfer Model: Lessons from Single-Molecule FRET

(2009) Guy Ziv et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Local conformational dynamics in  -helices measured by fast triplet transfer

(2009) B. Fierz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-molecule spectroscopy of the temperature-induced collapse of unfolded proteins

(2009) D. Nettels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein folding studied by single-molecule FRET

(2008) Benjamin Schuler et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Two-dimensional fluorescence resonance energy transfer as a probe for protein folding: A theoretical study

(2008) Christina L. Ting et al.   JOURNAL OF CHEMICAL PHYSICS

Kinetics of Loop Formation in Polymer Chains†

(2008) Ngo Minh Toan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Unfolded Protein and Peptide Dynamics Investigated with Single-Molecule FRET and Correlation Spectroscopy from Picoseconds to Seconds†

(2008) Daniel Nettels et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Collapse transition in proteins

(2008) Guy Ziv et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Role of Internal Chain Dynamics on the Rupture Kinetic of Adhesive Contacts

(2008) V. Barsegov et al.   PHYSICAL REVIEW LETTERS

Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes

(2008) C. Hyeon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measuring internal friction of an ultrafast-folding protein

(2008) T. Cellmer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA