Improved coarse-graining of Markov state models via explicit consideration of statistical uncertainty
出版年份 2012 全文链接
标题
Improved coarse-graining of Markov state models via explicit consideration of statistical uncertainty
作者
关键词
-
出版物
JOURNAL OF CHEMICAL PHYSICS
Volume 137, Issue 13, Pages 134111
出版商
AIP Publishing
发表日期
2012-10-06
DOI
10.1063/1.4755751
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- EMMA: A Software Package for Markov Model Building and Analysis
- (2012) Martin Senne et al. Journal of Chemical Theory and Computation
- Efficient Construction of Mesostate Networks from Molecular Dynamics Trajectories
- (2012) Andreas Vitalis et al. Journal of Chemical Theory and Computation
- Markov models of molecular kinetics: Generation and validation
- (2011) Jan-Hendrik Prinz et al. JOURNAL OF CHEMICAL PHYSICS
- MSMBuilder2: Modeling Conformational Dynamics on the Picosecond to Millisecond Scale
- (2011) Kyle A. Beauchamp et al. Journal of Chemical Theory and Computation
- Mapping the dynamics of multi-dimensional systems onto a nearest-neighbor coupled discrete set of states conserving the mean first-passage times: a projective dynamics approach
- (2011) Katja Biswas et al. Journal of Physics A-Mathematical and Theoretical
- Measures of trajectory ensemble disparity in nonequilibrium statistical dynamics
- (2011) Gavin E Crooks et al. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT
- Network models for molecular kinetics and their initial applications to human health
- (2010) Gregory R Bowman et al. CELL RESEARCH
- Functional versus folding landscapes: the same yet different
- (2010) Pavel I Zhuravlev et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- A Bayesian method for construction of Markov models to describe dynamics on various time-scales
- (2010) Emily K. Rains et al. JOURNAL OF CHEMICAL PHYSICS
- Comparing geometric and kinetic cluster algorithms for molecular simulation data
- (2010) Bettina Keller et al. JOURNAL OF CHEMICAL PHYSICS
- Enhanced Modeling via Network Theory: Adaptive Sampling of Markov State Models
- (2010) Gregory R. Bowman et al. Journal of Chemical Theory and Computation
- Protein folded states are kinetic hubs
- (2010) G. R. Bowman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bayesian comparison of Markov models of molecular dynamics with detailed balance constraint
- (2009) Sergio Bacallado et al. JOURNAL OF CHEMICAL PHYSICS
- Using generalized ensemble simulations and Markov state models to identify conformational states
- (2009) Gregory R. Bowman et al. METHODS
- Probability distributions of molecular observables computed from Markov models
- (2008) Frank Noé JOURNAL OF CHEMICAL PHYSICS
- The relative entropy is fundamental to multiscale and inverse thermodynamic problems
- (2008) M. Scott Shell JOURNAL OF CHEMICAL PHYSICS
- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
- (2008) Berk Hess et al. Journal of Chemical Theory and Computation
- Coarse Master Equations for Peptide Folding Dynamics†
- (2008) Nicolae-Viorel Buchete et al. JOURNAL OF PHYSICAL CHEMISTRY B
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More