Rigorous coarse-graining for the dynamics of linear systems with applications to relaxation dynamics in proteins

Dominant reaction pathways in protein folding: A direct validation against molecular dynamics simulations

(2010) Pietro Faccioli et al.   JOURNAL OF CHEMICAL PHYSICS

Coarse-Grained Elastic Models of Protein Structures for Understanding Their Mechanics and Dynamics

(2010) Kilho Eom et al.   Journal of Computational and Theoretical Nanoscience

Domain decomposition-based structural condensation of large protein structures for understanding their conformational dynamics

(2010) Jae In Kim et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Coarse-grained protein-protein stiffnesses and dynamics from all-atom simulations

(2010) Stephen D. Hicks et al.   PHYSICAL REVIEW E

Relative entropy as a universal metric for multiscale errors

(2010) Aviel Chaimovich et al.   PHYSICAL REVIEW E

Elasticity of Globular Proteins Measured from the ac Susceptibility

(2010) Yong Wang et al.   PHYSICAL REVIEW LETTERS

Tracing entire operation cycles of molecular motor hepatitis C virus helicase in structurally resolved dynamical simulations

(2010) H. Flechsig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why size and speed matter: frequency dependence and the mechanical properties of biomolecules

(2010) Kathryn A. Melzak et al.   Soft Matter

Multiscale Coarse-Graining of the Protein Energy Landscape

(2010) Ronald D. Hills et al.   PLoS Computational Biology

Effects of Surface Water on Protein Dynamics Studied by a Novel Coarse-Grained Normal Mode Approach

(2008) Lei Zhou et al.   BIOPHYSICAL JOURNAL

A Unification of the Elastic Network Model and the Gaussian Network Model for Optimal Description of Protein Conformational Motions and Fluctuations

(2008) Wenjun Zheng   BIOPHYSICAL JOURNAL

A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules

(2008) Zhiyong Zhang et al.   BIOPHYSICAL JOURNAL

Langevin Network Model of Myosin†

(2008) Benjamin T. Miller et al.   JOURNAL OF PHYSICAL CHEMISTRY B