Optimal modeling of atomic fluctuations in protein crystal structures for weak crystal contact interactions

Application of Elastic Network Models to Proteins in the Crystalline State

(2009) Demian Riccardi et al.   BIOPHYSICAL JOURNAL

Coupling between Normal Modes Drives Protein Conformational Dynamics: Illustrations Using Allosteric Transitions in Myosin II

(2009) Wenjun Zheng et al.   BIOPHYSICAL JOURNAL

Approximate normal mode analysis based on vibrational subsystem analysis with high accuracy and efficiency

(2009) Jeffrey Hafner et al.   JOURNAL OF CHEMICAL PHYSICS

A Dictionary for Protein Side-Chain Entropies from NMR Order Parameters

(2009) Da-Wei Li et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Protein elastic network models and the ranges of cooperativity

(2009) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Normal-mode-based modeling of allosteric couplings that underlie cyclic conformational transition in F1ATPase

(2009) Wenjun Zheng   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model

(2009) Wenjun Zheng et al.   BMC STRUCTURAL BIOLOGY

Algorithm 887

(2008) Yanqing Chen et al.   ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE

A Unification of the Elastic Network Model and the Gaussian Network Model for Optimal Description of Protein Conformational Motions and Fluctuations

(2008) Wenjun Zheng   BIOPHYSICAL JOURNAL

Vibrational subsystem analysis: A method for probing free energies and correlations in the harmonic limit

(2008) H. Lee Woodcock et al.   JOURNAL OF CHEMICAL PHYSICS

A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography

(2008) M. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparisons of experimental and computed protein anisotropic temperature factors

(2008) Lei Yang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Close Correspondence between the Motions from Principal Component Analysis of Multiple HIV-1 Protease Structures and Elastic Network Modes

(2008) Lei Yang et al.   STRUCTURE