4.7 Article

Analytic derivatives for the Cholesky representation of the two-electron integrals

期刊

JOURNAL OF CHEMICAL PHYSICS
卷 129, 期 3, 页码 -

出版社

AMER INST PHYSICS
DOI: 10.1063/1.2955755

关键词

-

向作者/读者索取更多资源

We propose a formalism for calculating analytic derivatives of the electronic energy with respect to nuclear coordinates using Cholesky decomposition of the two-electron integrals. The formalism is derived by exploiting the equivalence of Cholesky decomposition and density fitting when a suitable auxiliary basis set is used for expanding atomic orbital product densities in the latter. An implementation of gradients at the nonhybrid density functional theory level is presented, and sample calculations demonstrate that the errors in equilibrium geometries due to the Cholesky representation of the integrals can be controlled by adjusting the decomposition threshold. (C) 2008 American Institute of Physics.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Chemistry, Physical

Linear and Nonlinear Optical Properties from TDOMP2 Theory

Hakon Emil Kristiansen, Benedicte Sverdrup Ofstad, Eirill Hauge, Einar Aurbakken, Oyvind Sigmundson Schoyen, Simen Kvaal, Thomas Bondo Pedersen

Summary: In this study, we derive real-time (RT) time and its biorthogonal companion from the time-dependent bivariational principle and a parametrization based on the exponential orbital rotation operator formulation. Applying the TDOMP2 method, we find that absorption spectra are of similar quality to TDCC2 spectra, while frequency-dependent polarizabilities and hyperpolarizabilities are significantly closer to TDCCSD results compared to TDCC2 simulations.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2022)

Article Chemistry, Physical

Laser-induced dynamic alignment of the HD molecule without the Born-Oppenheimer approximation

L. Adamowicz, S. Kvaal, C. Lasser, T. B. Pedersen

Summary: This research demonstrates the emergence of alignment from non-BO quantum dynamics simulations and extracts the degree of alignment using pseudo-proton coordinates. The study utilizes time-independent explicitly correlated Gaussian basis functions and a variational, electric-field-dependent basis-set construction procedure.

JOURNAL OF CHEMICAL PHYSICS (2022)

Article Chemistry, Medicinal

Simulation Reveals the Chameleonic Behavior of Macrocycles

Daniel Sethio, Vasanthanathan Poongavanam, Ruisheng Xiong, Mohit Tyagi, Duc Duy Vo, Roland Lindh, Jan Kihlberg

Summary: Conformational analysis is crucial for the design of bioactive molecules, and it becomes even more challenging for macrocycles due to their unique characteristics. In this study, we simulated the conformations of five designed macrocycles and verified the results against experimental measurements. Our simulations accurately predicted the intramolecular interactions and revealed a solvent-induced conformational switch of the macrocyclic ring. This provides a foundation for the rational design of molecular chameleons that can adapt to different environments.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2023)

Article Chemistry, Physical

Adiabatic extraction of nonlinear optical properties from real-time time-dependent electronic-structure theory

Benedicte Sverdrup Ofstad, Hakon Emil Kristiansen, Einar Aurbakken, Oyvind Sigmundson Schoyen, Simen Kvaal, Thomas Bondo Pedersen

Summary: Real-time simulations of laser-driven electron dynamics allow for the extraction of molecular optical properties through all orders in response theory. However, accuracy deteriorates for higher-order responses due to nonadiabatic effects caused by the finite-time ramping of the external laser field. Three different approaches for extracting electrical properties from real-time electronic-structure simulations are investigated. Quadratic ramping is found to yield highly accurate results at approximately half the computational cost for polarizabilities, hyperpolarizabilities, and a measure of reliability.

JOURNAL OF CHEMICAL PHYSICS (2023)

Article Chemistry, Physical

Smooth Things Come in Threes: A Diabatic Surrogate Model for Conical Intersection Optimization

Ignacio Fdez Galvan, Roland Lindh

Summary: In this study, a pseudodiabatic surrogate model is developed based on Gaussian process regression, which accurately reproduces the adiabatic surfaces and significantly reduces the computational effort required to obtain minimum energy crossing points using the restricted variance optimization method.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Physical

A Multiconfigurational Wave Function Implementation of the Frenkel Exciton Model for Molecular Aggregates

Andy Kaiser, Razan E. Daoud, Francesco Aquilante, Oliver Kuhn, Luca De Vico, Sergey I. Bokarev

Summary: We implemented the Frenkel exciton model into the OpenMolcas program package to calculate collective electronic excited states of molecular aggregates. Our protocol does not rely on diabatization schemes or supermolecule calculations, and the use of Cholesky decomposition for pair interactions improves computational efficiency. We applied our method to two test systems and compared it with the dipole approximation.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Physical

The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry

Giovanni Li Manni, Ignacio Fdez. Galvan, Ali Alavi, Flavia Aleotti, Francesco Aquilante, Jochen Autschbach, Davide Avagliano, Alberto Baiardi, Jie J. Bao, Stefano Battaglia, Letitia Birnoschi, Alejandro Blanco-Gonzalez, Sergey I. Bokarev, Ria Broer, Roberto Cacciari, Paul B. Calio, Rebecca K. Carlson, Rafael Carvalho Couto, Luis Cerdan, Liviu F. Chibotaru, Nicholas F. Chilton, Jonathan Richard Church, Irene Conti, Sonia Coriani, Juliana Cuellar-Zuquin, Razan E. Daoud, Nike Dattani, Piero Decleva, Coen de Graaf, Mickael G. Delcey, Luca De Vico, Werner Dobrautz, Sijia S. Dong, Rulin Feng, Nicolas Ferre, Michael Filatov (Gulak), Laura Gagliardi, Marco Garavelli, Leticia Gonzalez, Yafu Guan, Meiyuan Guo, Matthew R. Hennefarth, Matthew R. Hermes, Chad E. Hoyer, Miquel Huix-Rotllant, Vishal Kumar Jaiswal, Andy Kaiser, Danil S. Kaliakin, Marjan Khamesian, Daniel S. King, Vladislav Kochetov, Marek Krosnicki, Arpit Arun Kumaar, Ernst D. Larsson, Susi Lehtola, Marie-Bernadette Lepetit, Hans Lischka, Pablo Lopez Rios, Marcus Lundberg, Dongxia Ma, Sebastian Mai, Philipp Marquetand, Isabella C. D. Merritt, Francesco Montorsi, Maximilian Morchen, Artur Nenov, Vu Ha Anh Nguyen, Yoshio Nishimoto, Meagan S. Oakley, Massimo Olivucci, Markus Oppel, Daniele Padula, Riddhish Pandharkar, Quan Manh Phung, Felix Plasser, Gerardo Raggi, Elisa Rebolini, Markus Reiher, Ivan Rivalta, Daniel Roca-Sanjuan, Thies Romig, Arta Anushirwan Safari, Aitor Sanchez-Mansilla, Andrew M. Sand, Igor Schapiro, Thais R. Scott, Javier Segarra-Marti, Francesco Segatta, Dumitru-Claudiu Sergentu, Prachi Sharma, Ron Shepard, Yinan Shu, Jakob K. Staab, Tjerk P. Straatsma, Lasse Kragh Sorensen, Bruno Nunes Cabral Tenorio, Donald G. Truhlar, Liviu Ungur, Morgane Vacher, Valera Veryazov, Torben Arne Voss, Oskar Weser, Dihua Wu, Xuchun Yang, David Yarkony, Chen Zhou, J. Patrick Zobel, Roland Lindh

Summary: This article describes the developments of the open-source OpenMolcas chemistry software environment since spring 2020, focusing on the novel functionalities in the stable branch and interfaces with other packages. These developments cover a wide range of topics in computational chemistry and provide an overview of the chemical phenomena and processes that OpenMolcas can address.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Review Chemistry, Multidisciplinary

Time-dependent coupled-cluster theory

Benedicte Sverdrup Ofstad, Einar Aurbakken, Oyvind Sigmundson Schoyen, Hakon Emil Kristiansen, Simen Kvaal, Thomas Bondo Pedersen

Summary: In recent years, there has been growing interest in time-dependent coupled-cluster (TDCC) theory for simulating laser-driven electronic dynamics in atoms and molecules, as well as molecular vibrational dynamics. This review covers different types of single-reference TDCC theory based on orthonormal static, orthonormal time-dependent, or biorthonormal time-dependent spin orbitals. The time-dependent extension of equation-of-motion coupled-cluster theory and various applications of TDCC methods are also discussed, including the calculation of linear absorption spectra, response functions, high harmonic generation spectra, and ionization dynamics. Additionally, the role of TDCC theory in finite-temperature many-body quantum mechanics and other application areas is briefly described.

WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE (2023)

Article Chemistry, Physical

Characterizing Conical Intersections in DNA/RNA Nucleobases with Multiconfigurational Wave Functions of Varying Active Space Size

Juliana Cuellar-Zuquin, Ana Julieta Pepino, Ignacio Fdez Galvan, Ivan Rivalta, Francesco Aquilante, Marco Garavelli, Roland Lindh, Javier Segarra-Marti

Summary: We characterized the photochemically relevant conical intersections between different DNA/RNA nucleobases using CASSCF algorithms. Our results show that the size of the active space significantly affects the conical intersection topographies, while the basis set size seems to have a minor effect. We ruled out structural changes as a key factor and highlighted the importance of accurately describing the electronic states involved in these intersections.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Physical

Cost-Efficient High-Resolution Linear Absorption Spectra through Extrapolating the Dipole Moment from Real-Time Time-Dependent Electronic-Structure Theory

Eirill Hauge, Hakon Emil Kristiansen, Lukas Konecny, Marius Kadek, Michal Repisky, Thomas Bondo Pedersen

Summary: We propose a novel function fitting method for approximating the propagation of the time-dependent electric dipole moment from real-time electronic structure calculations. The method achieves arbitrary spectral resolution through extrapolation by fitting shorter dipole trajectories. Numerical testing demonstrates that this fitting method can reproduce high-resolution spectra using short dipole trajectories.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Multidisciplinary

Deep learning metal complex properties with natural quantum graphs

Hannes Kneiding, Ruslan Lukin, Lucas Lang, Simen Reine, Thomas Bondo Pedersen, Riccardo De Bin, David Balcells

Summary: This paper introduces a method for studying transition metal complexes (TMCs) using deep graph learning, which utilizes electronic structure data from natural bond orbital (NBO) analysis and develops a representation called natural quantum graph (NatQG). With this method, the quantum properties of TMCs can be predicted, and the performance is better compared to traditional descriptor-based methods.

DIGITAL DISCOVERY (2023)

Article Chemistry, Physical

The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry

Giovanni Li Manni, Ignacio Fdez. Galvan, Ali Alavi, Flavia Aleotti, Francesco Aquilante, Jochen Autschbach, Davide Avagliano, Alberto Baiardi, Jie J. Bao, Stefano Battaglia, Letitia Birnoschi, Alejandro Blanco-Gonzalez, Sergey I. Bokarev, Ria Broer, Roberto Cacciari, Paul B. Calio, Rebecca K. Carlson, Rafael Carvalho Couto, Luis Cerdan, Liviu F. Chibotaru, Nicholas F. Chilton, Jonathan Richard Church, Irene Conti, Sonia Coriani, Juliana Cuellar-Zuquin, Razan E. Daoud, Nike Dattani, Piero Decleva, Coen de Graaf, Mickael G. Delcey, Luca De Vico, Werner Dobrautz, Sijia S. Dong, Rulin Feng, Nicolas Ferre, Michael Filatov(Gulak), Laura Gagliardi, Marco Garavelli, Leticia Gonzalez, Yafu Guan, Meiyuan Guo, Matthew R. Hennefarth, Matthew R. Hermes, Chad E. Hoyer, Miquel Huix-Rotllant, Vishal Kumar Jaiswal, Andy Kaiser, Danil S. Kaliakin, Marjan Khamesian, Daniel S. King, Vladislav Kochetov, Marek Krosnicki, Arpit Arun Kumaar, Ernst D. Larsson, Susi Lehtola, Marie-Bernadette Lepetit, Hans Lischka, Pablo Lopez Rios, Marcus Lundberg, Dongxia Ma, Sebastian Mai, Philipp Marquetand, Isabella C. D. Merritt, Francesco Montorsi, Maximilian Morchen, Artur Nenov, Vu Ha Anh Nguyen, Yoshio Nishimoto, Meagan S. Oakley, Massimo Olivucci, Markus Oppel, Daniele Padula, Riddhish Pandharkar, Quan Manh Phung, Felix Plasser, Gerardo Raggi, Elisa Rebolini, Markus Reiher, Ivan Rivalta, Daniel Roca-Sanjuan, Thies Romig, Arta Anushirwan Safari, Aitor Sanchez-Mansilla, Andrew M. Sand, Igor Schapiro, Thais R. Scott, Javier Segarra-Marti, Francesco Segatta, Dumitru-Claudiu Sergentu, Prachi Sharma, Ron Shepard, Yinan Shu, Jakob K. Staab, Tjerk P. Straatsma, Lasse Kragh Sorensen, Bruno Nunes Cabral Tenorio, Donald G. Truhlar, Liviu Ungur, Morgane Vacher, Valera Veryazov, Torben Arne Voss, Oskar Weser, Dihua Wu, Xuchun Yang, David Yarkony, Chen Zhou, J. Patrick Zobel, Roland Lindh

Summary: This article describes the recent developments in the open-source chemistry software environment, OpenMolcas, since spring 2020. It focuses on the new functionalities and interfaces with other packages. The article presents various topics in computational chemistry, including electronic structure theory, electronic spectroscopy simulations, molecular structure optimizations, ab initio molecular dynamics, and other new features. Overall, it highlights the capabilities of OpenMolcas in addressing chemical phenomena and processes, making it an attractive platform for advanced atomistic computer simulations.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2023)

Article Chemistry, Multidisciplinary

Do 2-coordinate iodine(i) and silver(i) complexes form nucleophilic iodonium interactions (NIIs) in solution?

Scott Wilcox, Daniel Sethio, Jas S. Ward, Antonio Frontera, Roland Lindh, Kari Rissanen, Mate Erdelyi

Summary: The interaction between a [bis(pyridine)iodine(i)](+) cation and a [bis(pyridine)silver(i)](+) cation, where an iodonium ion acts as a nucleophile by transferring electron density to the silver(i) cation, is reinvestigated in this study. No measurable interaction is observed between the cationic species in solution using NMR. DFT calculations suggest that any attractive interaction between these complexes in solution is primarily due to the pi-pi interaction of pyridines.

CHEMICAL COMMUNICATIONS (2022)

暂无数据